SMTL ID : 6x9f.2 (7 other biounits)

Pseudomonas aeruginosa MurC with AZ8074

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x UXP: [(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanol(Non-covalent)

UXP.1: 9 residues within 4Å: Chain A: H.110, G.111, T.175, N.176, C.212, Y.232, H.274, L.277, N.278 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.110, A:H.274, A:L.277 Hydrogen bonds: A:N.176, A:Y.232, A:N.278, A:N.278 pi-Cation interactions: A:H.274

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.101, A.149, S.150, R.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.149 EDO.3: 3 residues within 4Å: Chain A: P.89, E.92, H.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.166 EDO.4: 4 residues within 4Å: Chain A: H.102, R.151, Y.152, E.289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.151 EDO.5: 3 residues within 4Å: Chain A: D.214, L.273, L.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.214, A:D.214 EDO.6: 3 residues within 4Å: Chain A: P.263, L.264, D.265 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.265 Water bridges: A:D.265 EDO.7: 7 residues within 4Å: Chain A: A.12, G.13, C.15, G.16, G.136, R.137, L.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.13, A:G.16, A:L.138

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.8: 4 residues within 4Å: Chain A: R.219, T.231, D.237, A.238 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.231 Salt bridges: A:D.237 DMS.9: 5 residues within 4Å: Chain A: L.128, R.151, Y.152, E.289, G.290 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.289 DMS.10: 3 residues within 4Å: Chain A: L.81, P.86, V.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.87 DMS.11: 5 residues within 4Å: Chain A: V.213, D.214, D.215, P.216, R.219 No protein-ligand interaction detected (PLIP) DMS.12: 4 residues within 4Å: Chain A: R.2, L.24, G.25, Y.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.2 pi-Cation interactions: A:Y.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horanyi, P.S. et al., Pseudomonas aeruginosa MurC with AZ8074. To Be Published

Release Date

2020-09-02

Peptides

UDP-N-acetylmuramate--L-alanine ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-N-acetylmuramate--L-alanine ligase

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