SMTL ID : 6x9n.5 (7 other biounits)

Pseudomonas aeruginosa MurC with AZ5595

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x UYD: (2R)-2-({4-[(5-tert-butyl-1-methyl-1H-pyrazol-3-yl)amino]-1H-pyrazolo[3,4-d]pyrimidin-6-yl}amino)-2-phenylethan-1-ol(Non-covalent)

UYD.1: 11 residues within 4Å: Chain A: H.110, G.111, T.114, T.175, N.176, C.212, Y.232, H.274, L.277, N.278 Ligands: EDO.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.110, A:H.274, A:L.277 Hydrogen bonds: A:T.175, A:N.176, A:Y.232, A:N.278, A:N.278 Water bridges: A:T.175, A:D.178 pi-Cation interactions: A:H.274

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: F.189, N.190, K.193, V.217, E.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.190, A:K.193, A:E.220 EDO.4: 4 residues within 4Å: Chain A: D.214, L.273, L.277 Ligands: UYD.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.214 EDO.5: 3 residues within 4Å: Chain A: P.263, L.264, D.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.265

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 4 residues within 4Å: Chain A: R.151, Y.152, E.289, G.290 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.289 DMS.7: 4 residues within 4Å: Chain A: R.2, L.24, G.25, Y.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.2 pi-Cation interactions: A:Y.26

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 2 residues within 4Å: Chain A: P.86, V.87 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horanyi, P.S. et al., Pseudomonas aeruginosa MurC with AZ5595. To Be Published

Release Date

2020-09-02

Peptides

UDP-N-acetylmuramate--L-alanine ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

UDP-N-acetylmuramate--L-alanine ligase

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