SMTL ID : 6xc0.1 (1 other biounit)

Crystal structure of bacteriophage T4 spackle and lysozyme in monoclinic form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.118, N.120, T.121 Ligands: SIN.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.120, A:T.121 EDO.4: 2 residues within 4Å: Chain B: L.28, W.31 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.43

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 9 residues within 4Å: Chain A: G.30, H.31, L.32, K.35, D.75, A.108, F.109, M.111, G.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.32, A:D.75 Salt bridges: A:K.35

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 5 residues within 4Å: Chain A: K.118, S.141, L.142, W.143 Ligands: EDO.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.142, A:W.143 Water bridges: A:T.121

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 2 residues within 4Å: Chain B: N.86 Ligands: CL.6 2 PLIP interactions: 2 interactions with chain B Water bridges: B:N.87, B:N.87

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain B: R.54, K.88 Ligands: FMT.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis of superinfection exclusion by bacteriophage T4 Spackle. Commun Biol (2020)

Release Date

2020-12-02

Peptides

Lysozyme: A
Protein spackle: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Lysozyme

Protein spackle

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