SMTL ID : 6xc0.2 (1 other biounit)

Crystal structure of bacteriophage T4 spackle and lysozyme in monoclinic form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 7 residues within 4Å: Chain A: K.118, F.119, N.120, T.121, S.141, L.142, W.143 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:S.141, A:L.142, A:W.143 Water bridges: A:M.122, A:M.122 EPE.2: 9 residues within 4Å: Chain A: G.30, H.31, L.32, K.35, D.75, A.108, F.109, M.111, G.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.32, A:D.75 Salt bridges: A:K.35

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: W.19, P.60 Chain B: D.36, Q.37, T.38 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.38, B:T.38 Water bridges: B:Q.37 EDO.5: 3 residues within 4Å: Chain B: D.27, L.28, W.31 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.27 Water bridges: B:Q.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis of superinfection exclusion by bacteriophage T4 Spackle. Commun Biol (2020)

Release Date

2020-12-02

Peptides

Lysozyme: A
Protein spackle: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Lysozyme

Protein spackle

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