SMTL ID : 6xds.1

Crystal structure of MBP-TREM2 Ig domain fusion with fragment, 2-((4-bromophenyl)amino)ethan-1-ol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-GLC.1: 19 residues within 4Å: Chain A: N.12, D.14, K.15, E.44, E.45, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, Y.341, R.344 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.45, A:R.66, A:R.66, A:R.344, A:R.344 Water bridges: A:D.65, A:W.340

1 x V5S: 2-[(4-bromophenyl)amino]ethan-1-ol(Non-covalent)

V5S.2: 3 residues within 4Å: Chain A: R.354, M.391 Ligands: DMS.4 No protein-ligand interaction detected (PLIP)

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: A.338, Y.341, T.470 Ligands: DMS.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.470 DMS.4: 1 residues within 4Å: Ligands: V5S.2 No protein-ligand interaction detected (PLIP) DMS.5: 6 residues within 4Å: Chain A: K.392, H.393, D.469, T.470, L.471 Ligands: DMS.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.392 Salt bridges: A:D.469

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byrne, N.J. et al., Development of a robust crystallization platform for immune receptor TREM2 using a crystallization chaperone strategy. Protein Expr.Purif. (2021)

Release Date

2021-02-17

Peptides

Sugar ABC transporter substrate-binding protein,Triggering receptor expressed on myeloid cells 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sugar ABC transporter substrate-binding protein,Triggering receptor expressed on myeloid cells 2