SMTL ID : 6xe1.1

Structure of SARS-CoV-2 spike protein receptor binding domain in complex with a potent neutralizing antibody, CV30 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain C: F.20, G.21, N.25, L.50, S.53 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.50 Hydrogen bonds: C:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hurlburt, N.K. et al., Structural basis for potent neutralization of SARS-CoV-2 and role of antibody affinity maturation. Nat Commun (2020)

Release Date

2020-07-01

Peptides

CV30 Fab Heavy chain: A
CV30 Fab Kappa chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
E

CV30 Fab Heavy chain

CV30 Fab Kappa chain

Spike protein S1

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