SMTL ID : 6xif.1

PCSK9(deltaCRD) in complex with cyclic peptide 83

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Z9J- ALA- DAL- APD- V7P- GNC- OLT- 0A1- 3WX: Peptide 83(Non-covalent)

Z9J-ALA-DAL-APD-V7P-GNC-OLT-0A1-3WX.1: 15 residues within 4Å: Chain B: S.1, P.3, W.4, D.86, A.87, D.215, I.217, S.220, D.222, C.223, T.225, C.226, F.227, V.228, S.229 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:D.86, B:A.87, B:I.217, B:I.217, B:D.222, B:F.227, B:V.228 Hydrogen bonds: B:F.227, B:F.227, B:S.229, B:S.229, B:S.229 Water bridges: B:T.225 pi-Stacking: B:F.227

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: T.33, F.34 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.34, A:F.34 Water bridges: A:A.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alleyne, C. et al., Series of Novel and Highly Potent Cyclic Peptide PCSK9 Inhibitors Derived from an mRNA Display Screen and Optimized via Structure-Based Design. J.Med.Chem. (2020)

Release Date

2020-11-18

Peptides

Proprotein convertase subtilisin/kexin type 9: A
Proprotein convertase subtilisin/kexin type 9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proprotein convertase subtilisin/kexin type 9

Proprotein convertase subtilisin/kexin type 9

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