SMTL ID : 7s5g.1

PCSK9 in complex with compound 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Z9J- ALA- DAL- PHE- FTR- PRO- THR- 0A1- 3WX: Z9J-ALA-DAL-PHE-FTR-PRO-THR-0A1-3WX(Non-covalent)

Z9J-ALA-DAL-PHE-FTR-PRO-THR-0A1-3WX.1: 15 residues within 4Å: Chain B: S.1, P.3, W.4, D.86, A.87, D.215, I.217, S.220, D.222, T.225, C.226, F.227, V.228, S.229 Ligands: 89N.3 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:D.86, B:A.87, B:I.217, B:I.217, B:D.222, B:F.227, B:V.228 Hydrogen bonds: B:T.225, B:F.227, B:F.227, B:S.229, B:S.229, B:S.229 pi-Stacking: B:F.227

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: T.33, F.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.34 Water bridges: A:A.32

1 x 89N: (2E)-but-2-ene-1,4-diol(Non-covalent)

89N.3: 3 residues within 4Å: Chain B: C.226 Ligands: Z9J-ALA-DAL-PHE-FTR-PRO-THR-0A1-3WX.1, Z9J-ALA-DAL-PHE-FTR-PRO-THR-0A1-3WX.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tucker, T.J. et al., A Series of Novel, Highly Potent, and Orally Bioavailable Next-Generation Tricyclic Peptide PCSK9 Inhibitors. J.Med.Chem. (2021)

Release Date

2021-11-03

Peptides

Propeptide of Proprotein convertase subtilisin/kexin type 9: A
Proprotein convertase subtilisin/kexin type 9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Propeptide of Proprotein convertase subtilisin/kexin type 9

Proprotein convertase subtilisin/kexin type 9

Related Entries With Identical Sequence