SMTL ID : 6xkp.1 (1 other biounit)

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CV07-270

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.25, V.49 No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: D.73, N.74, A.75 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.73, B:N.74, B:A.75 SO4.3: 7 residues within 4Å: Chain A: V.127, Q.180 Chain B: R.100 Chain C: Y.51, R.56, P.57, S.58 6 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:Y.51, C:R.56, C:S.58, A:V.127, A:Q.180 Salt bridges: B:R.100 SO4.4: 4 residues within 4Å: Chain A: K.126 Chain B: F.27, T.28, Y.32 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.126 Hydrogen bonds: B:T.28 SO4.5: 3 residues within 4Å: Chain C: K.68, S.69, G.70 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.70 SO4.6: 3 residues within 4Å: Chain A: Y.131 Chain C: E.52, N.55 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Y.131, C:N.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kreye, J. et al., A Therapeutic Non-self-reactive SARS-CoV-2 Antibody Protects from Lung Pathology in a COVID-19 Hamster Model. Cell (2020)

Release Date

2020-10-14

Peptides

Spike protein S1: A
CV07-270 Heavy Chain: B
CV07-270 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

CV07-270 Heavy Chain

CV07-270 Light Chain

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