SMTL ID : 7kn5.2 (1 other biounit)

Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobodies VHH E and U

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.20, G.21, N.25, V.49, L.50 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.20, A:L.50 Hydrogen bonds: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koenig, P.A. et al., Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape. Science (2021)

Release Date

2021-01-20

Peptides

Spike protein S1: A
VHH E: B
VHH U: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

Spike protein S1

VHH E

VHH U

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