SMTL ID : 6xr5.1 (3 other biounits)

Crystal Structure of Diphosphomevalonate decarboxylase (MVD1) Cryptococcus neoformans var. grubii serotype A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: Y.26, K.29, I.35, R.83, S.162, G.163, T.218, M.221 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.26, A:G.163 Water bridges: A:R.83, A:S.162, A:S.164 Salt bridges: A:K.29, A:R.83 SO4.2: 1 residues within 4Å: Chain A: R.378 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.378, A:R.378, A:R.378 Salt bridges: A:R.378 SO4.4: 6 residues within 4Å: Chain B: Y.26, K.29, I.35, S.162, G.163, T.218 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.26 Water bridges: B:S.164 Salt bridges: B:K.29 SO4.6: 3 residues within 4Å: Chain B: A.128, S.129, S.130 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.129, B:S.130 Water bridges: B:A.131, B:S.217

2 x ADE: ADENINE(Non-covalent)

ADE.3: 7 residues within 4Å: Chain A: L.71, L.84, S.117, S.129, S.130, G.133, L.134 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.117, A:S.117, A:S.130 Water bridges: A:S.53, A:N.119 ADE.5: 5 residues within 4Å: Chain B: L.71, S.117, S.129, S.130, G.133 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.117, B:S.117, B:S.130 Water bridges: B:N.119, B:N.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of Diphosphomevalonate decarboxylase (MVD1) from Cryptococcus neoformans var. grubii serotype A. to be published

Release Date

2020-09-23

Peptides

Diphosphomevalonate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Diphosphomevalonate decarboxylase

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