SMTL ID : 6xr5.2 (3 other biounits)

Crystal Structure of Diphosphomevalonate decarboxylase (MVD1) Cryptococcus neoformans var. grubii serotype A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: Y.26, K.29, I.35, R.83, S.162, G.163, T.218, M.221 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.26, A:G.163 Water bridges: A:R.83, A:S.162, A:S.164, A:S.164 Salt bridges: A:K.29, A:R.83 SO4.2: 3 residues within 4Å: Chain A: A.128, S.129, S.130 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.129, A:S.130, A:S.130 Water bridges: A:A.131

1 x ADE: ADENINE(Non-covalent)

ADE.3: 8 residues within 4Å: Chain A: L.71, L.84, S.117, N.119, S.129, S.130, G.133, L.134 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.53, A:S.117, A:S.117, A:N.119 Water bridges: A:T.55

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain B: N.20, I.21, A.22, R.167, D.310 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.22, B:R.167, B:D.310 Water bridges: B:R.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of Diphosphomevalonate decarboxylase (MVD1) from Cryptococcus neoformans var. grubii serotype A. to be published

Release Date

2020-09-23

Peptides

Diphosphomevalonate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
G

Diphosphomevalonate decarboxylase

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