SMTL ID : 6xro.1

Crystal structure of GlpG in complex with peptide boronate inhibitor, Ac-KRFRSMQYSA-B(OH)2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: Q.124, S.128, M.184, N.186, G.187 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: R.27, A.28, W.94 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: S.136, M.184, H.189 Chain B: A.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.171 Water bridges: A:N.89, A:N.89 NA.4: 5 residues within 4Å: Chain A: H.80, H.85, N.89 Chain B: S.9, A.10 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.85 Water bridges: A:H.85, B:S.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, S. et al., Designed Parasite-Selective Rhomboid Inhibitors Block Invasion and Clear Blood-Stage Malaria. Cell Chem Biol (2020)

Release Date

2020-09-16

Peptides

Rhomboid protease GlpG: A
peptide boronate inhibitor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Rhomboid protease GlpG

peptide boronate inhibitor

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