SMTL ID : 6xrp.1

Crystal structure of GlpG in complex with peptide ketoamide inhibitor, Ac-RVWHA-ketoamide-phenylbutyl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- VAL- TRP- HIS- ALA: peptide ketoamide inhibitor(Non-covalent)

ALA-ARG-VAL-TRP-HIS-ALA.1: 18 residues within 4Å: Chain A: M.55, F.81, H.85, N.89, Q.124, S.128, W.131, F.132, G.133, G.134, L.135, S.136, M.182, S.183, M.184, A.185, H.189 Ligands: V87.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.81, A:F.81, A:F.132, A:A.185 Hydrogen bonds: A:N.89, A:S.128, A:W.131, A:G.133, A:G.133, A:S.136, A:S.183, A:S.183, A:A.185 pi-Stacking: A:F.81

1 x V87: N-(4-phenylbutyl)formamide(Non-covalent)

V87.2: 12 residues within 4Å: Chain A: M.84, H.85, F.88, N.89, S.136, W.171, F.180, M.182, M.184, H.189 Ligands: ALA-ARG-VAL-TRP-HIS-ALA.1, ALA-ARG-VAL-TRP-HIS-ALA.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.84, A:F.88, A:W.171, A:F.180 Hydrogen bonds: A:N.89, A:S.136, A:H.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, S. et al., Designed Parasite-Selective Rhomboid Inhibitors Block Invasion and Clear Blood-Stage Malaria. Cell Chem Biol (2020)

Release Date

2020-09-16

Peptides

Rhomboid protease GlpG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Rhomboid protease GlpG

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