SMTL ID : 6xwg.1

Crystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound to the Human RARb2 DR5 Response Element

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.10, C.13, C.27, C.30 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.10, C:C.13, C:C.27, C:C.30 ZN.2: 4 residues within 4Å: Chain C: C.46, C.52, C.62, C.65 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.46, C:C.52, C:C.62, C:C.65 ZN.5: 4 residues within 4Å: Chain D: C.11, C.14, C.28, C.31 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.11, D:C.14, D:C.28, D:C.31 ZN.6: 4 residues within 4Å: Chain D: C.47, C.53, C.63, C.66 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.47, D:C.53, D:C.63, D:C.66

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain C: K.20, Y.25 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.20, C:K.20, C:Y.25

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain C: R.77, E.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osz, J. et al., Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR. Nucleic Acids Res. (2020)

Release Date

2020-09-09

Peptides

Retinoic acid receptor RXR-alpha: C
Retinoic acid receptor alpha: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

D
D

Retinoic acid receptor RXR-alpha

Retinoic acid receptor alpha

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