SMTL ID : 6y1l.1

Crystal structure of the paraoxon-modified A.17 antibody FAB fragment - L47R mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DEP: DIETHYL PHOSPHONATE(Covalent)

DEP.1: 10 residues within 4Å: Chain A: Y.34, I.38, W.109 Chain B: Y.37, G.90, T.91, W.92, P.98, V.99, F.100 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:W.92, B:P.98, A:I.38, A:W.109 Water bridges: B:S.35, A:A.107

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain B: D.86 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mokrushina, Y.A. et al., Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-23

Peptides

FAB A.17 L47R mutant HEAVY CHAIN: A
FAB A.17 L47R mutant Light CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

FAB A.17 L47R mutant HEAVY CHAIN

FAB A.17 L47R mutant Light CHAIN

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