SMTL ID : 6y49.1

Crystal structure of the paraoxon-modified A.17kappa antibody FAB fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DEP: DIETHYL PHOSPHONATE(Covalent)

DEP.1: 7 residues within 4Å: Chain A: W.109 Chain B: Y.37, G.90, T.91, W.92, P.98, F.100 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.98, B:F.100 Hydrogen bonds: B:S.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mokrushina, Y.A. et al., Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-16

Peptides

A.17kappa antibody FAB fragment - Heavy Chain: A
A.17kappa antibody FAB fragment - Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

A.17kappa antibody FAB fragment - Heavy Chain

A.17kappa antibody FAB fragment - Light Chain

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