SMTL ID : 6y7j.2 (1 other biounit)

Structure of the BRD9 bromodomain and compound 15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x OF5: 1-[8-(2,5-dimethoxyphenyl)pyrrolo[1,2-a]pyrimidin-6-yl]ethanone(Non-covalent)

OF5.1: 8 residues within 4Å: Chain A: F.31, F.32, F.34, V.36, I.40, A.41, N.87, Y.93 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.31, A:F.32, A:V.36, A:I.40, A:A.41, A:Y.93 Hydrogen bonds: A:N.87 pi-Stacking: A:Y.93, A:Y.93

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: I.47, I.48, K.49 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.49 Hydrogen bonds: A:K.49 Water bridges: A:H.50

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: D.38, G.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz-Saez, L. et al., Structure of the BRD9 bromodomain. To Be Published

Release Date

2021-03-31

Peptides

Bromodomain-containing protein 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 9

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