SMTL ID : 6y9l.1 (1 other biounit)

Crystal structure of TSWV glycoprotein N ectodomain (sGn)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: D.74, N.164, P.166, N.175 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 1 residues within 4Å: Chain B: N.175 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: N.77, N.81 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: L.80, N.81 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bahat, Y. et al., Crystal structure of tomato spotted wilt virus G N reveals a dimer complex formation and evolutionary link to animal-infecting viruses. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-30

Peptides

Glycoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Glycoprotein

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