SMTL ID : 6ya0.2 (1 other biounit)

Crystal structure of TSWV glycoprotein N ectodomain (Trypsin treated)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

monomer

Ligands

1 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-BMA.1: 3 residues within 4Å: Chain A: N.81, S.84, N.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.84, A:N.103

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.175 No protein-ligand interaction detected (PLIP)

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.3: 5 residues within 4Å: Chain A: K.86, E.88, Q.100, E.102, I.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bahat, Y. et al., Crystal structure of tomato spotted wilt virus G N reveals a dimer complex formation and evolutionary link to animal-infecting viruses. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-30

Peptides

Glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Glycoprotein

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