SMTL ID : 6ybm.1

Scaffold-ligand complex with ligand unmodelled.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

homo-trimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: N.13, S.153, K.154 Chain C: S.147, R.151, T.152, S.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.13 Water bridges: A:S.153, A:S.153 EDO.3: 9 residues within 4Å: Chain A: S.147, R.151, T.152, S.153 Chain B: K.125 Chain C: N.13, S.153, K.154, K.155 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:N.13, C:K.155, B:K.125, B:K.125 Water bridges: C:K.154 EDO.4: 4 residues within 4Å: Chain C: K.31, Y.79, F.83, P.84 3 PLIP interactions: 3 interactions with chain C Water bridges: C:K.31, C:K.31, C:P.84

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 4 residues within 4Å: Chain A: R.151, K.155 Chain B: P.105 Chain C: R.151 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:K.155 Water bridges: A:R.151, A:T.152, A:K.155, C:R.151, C:T.152 Salt bridges: A:R.151, A:R.151, A:K.155, A:K.155, C:R.151 Hydrophobic interactions: C:R.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zacharchenko, T. et al., Scaffold-ligand complex with ligand unmodelled. To Be Published

Release Date

2020-04-15

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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