SMTL ID : 6ydy.1

Cationic Trypsin in Complex with a D-Phe-Pro-benzylamine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.75, D.76, N.77, I.78, V.80, V.81, E.82, E.85 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.75, A:N.77, A:V.80, A:E.85, H2O.1, H2O.3

1 x K73: (2~{S})-~{N}-[[4-(aminomethyl)phenyl]methyl]-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]pyrrolidine-2-carboxamide(Non-covalent)

K73.2: 17 residues within 4Å: Chain A: H.63, N.102, T.103, L.104, D.194, S.195, C.196, Q.197, S.200, V.214, S.215, W.216, G.217, G.219, C.220, A.221, G.227 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.104, A:L.104, A:L.104, A:V.214, A:W.216, A:W.216 Hydrogen bonds: A:Q.197, A:S.200, A:S.215, A:G.217, A:G.217, A:G.219 Water bridges: A:G.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandner, A. et al., Cationic Trypsin in Complex with a D-Phe-Pro-benzylamine derivative. To Be Published

Release Date

2021-03-31

Peptides

Cationic Trypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cationic Trypsin

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