SMTL ID : 6yjp.1 (2 other biounits)

Crystal structure of a complex between glycosylated NKp30 and its deglycosylated tumour ligand B7-H6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: R.125, E.143, S.145, N.181, M.182, N.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.125, A:E.143, A:S.145, A:N.181, A:N.181 NAG.2: 3 residues within 4Å: Chain B: W.5, N.27, L.100 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.100 Hydrogen bonds: B:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skorepa, O. et al., Natural Killer Cell Activation Receptor NKp30 Oligomerization Depends on Its N -Glycosylation. Cancers (Basel) (2020)

Release Date

2020-07-29

Peptides

Natural cytotoxicity triggering receptor 3 ligand 1: A
Natural cytotoxicity triggering receptor 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Natural cytotoxicity triggering receptor 3 ligand 1

Natural cytotoxicity triggering receptor 3

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