SMTL ID : 6yjw.1

Structure of Fragaria ananassa O-methyltransferase crystallized with PAS polypeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: F.160, F.173, M.177, S.181, G.205, G.207, D.228, L.229, V.232, D.248, M.249, F.250, K.262, W.263, I.264, D.267, W.268 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.181, A:G.207, A:L.229, A:D.248, A:D.248, A:M.249, A:K.262 Water bridges: A:M.177, A:G.206, A:K.262 Salt bridges: A:K.262 pi-Stacking: A:F.160 SAH.5: 17 residues within 4Å: Chain B: F.160, F.173, M.177, S.181, G.205, G.207, D.228, L.229, V.232, D.248, M.249, F.250, K.262, W.263, I.264, D.267, W.268 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.181, B:G.207, B:L.229, B:D.248, B:D.248, B:M.249, B:K.262, B:K.262 Water bridges: B:K.262 Salt bridges: B:K.262 pi-Stacking: B:F.160

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 5 residues within 4Å: Chain A: D.161, D.248, F.250, H.272, K.275 6 PLIP interactions: 6 interactions with chain A Water bridges: A:D.161 Salt bridges: A:D.161, A:D.248, A:D.248, A:H.272, A:K.275 EPE.6: 6 residues within 4Å: Chain B: D.161, L.229, D.248, F.250, H.272, K.275 5 PLIP interactions: 5 interactions with chain B Salt bridges: B:D.161, B:D.248, B:D.248, B:H.272, B:K.275

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: K.34, E.38, D.130, K.131, R.168 Chain B: Y.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.34, A:E.38, A:D.130, A:K.131 EDO.4: 5 residues within 4Å: Chain A: V.72, R.76, R.79, R.101 Chain B: L.297 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79, A:R.79 EDO.7: 6 residues within 4Å: Chain A: Y.138 Chain B: K.34, E.38, D.130, K.131, R.168 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.34, B:E.38, B:D.130, B:K.131 EDO.8: 7 residues within 4Å: Chain B: M.127, L.133, F.173, M.177, I.316, M.317, H.320 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: L.297 Chain B: V.72, R.76, R.79, R.101 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:E.331, B:R.101 Hydrogen bonds: B:R.79, B:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiefner, A. et al., Proline/alanine-rich sequence (PAS) polypeptides as an alternative to PEG precipitants for protein crystallization. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-07-22

Peptides

O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

O-methyltransferase

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