SMTL ID : 6yvi.2 (1 other biounit)

EED in complex with a cyano-benzofuran

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x PV5: 5-fluoranyl-4-[[[8-(2-methylpyridin-3-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-yl]amino]methyl]-2,3-dihydro-1-benzofuran-7-carbonitrile(Non-covalent)

PV5.1: 12 residues within 4Å: Chain A: F.22, N.71, Y.73, N.119, K.136, L.165, D.235, C.236, Y.290, M.291, R.292, R.339 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.22, A:F.22, A:F.22, A:Y.73, A:Y.290, A:R.292 Hydrogen bonds: A:N.119, A:K.136, A:M.291 pi-Stacking: A:Y.73, A:Y.73, A:Y.290, A:Y.290, A:Y.290 pi-Cation interactions: A:R.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O' Donovan, D.H. et al., Free energy perturbation in the design of EED ligands as inhibitors of polycomb repressive complex 2 (PRC2) methyltransferase. Bioorg.Med.Chem.Lett. (2021)

Release Date

2021-05-12

Peptides

Polycomb protein EED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Polycomb protein EED

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