SMTL ID : 6yvt.4 (5 other biounits)

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with MD-253

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.139, D.141, F.192, H.200 Ligands: PW2.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.141, A:H.200, H2O.1

1 x PW2: 2-[[5-(6-methoxynaphthalen-2-yl)-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid(Non-covalent)

PW2.2: 19 residues within 4Å: Chain A: D.76, I.77, R.78, M.125, A.127, Y.129, Y.136, H.139, D.141, I.153, Y.155, L.169, F.192, H.200, V.202, R.209, A.211, W.215 Ligands: MN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.136 Hydrogen bonds: A:R.78, A:Y.129, A:Y.129, A:Y.155 Salt bridges: A:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demetriades, M. et al., Dynamic combinatorial chemistry employing boronic acids/boronate esters leads to potent oxygenase inhibitors. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2020-05-20

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Egl nine homolog 1

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