- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-2-1-mer
- Ligands
- 97 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.4: 22 residues within 4Å:- Chain X: Q.139, C.140, S.148, V.149, L.150, R.152, R.180, V.181, T.182, G.183, K.184, S.185, L.186, Q.190, T.361, R.362, G.363, L.425, V.456, G.457, E.460
- Ligands: MG.5
17 PLIP interactions:17 interactions with chain X- Hydrogen bonds: X:Q.139, X:C.140, X:L.150, X:L.150, X:T.182, X:G.183, X:K.184, X:S.185, X:L.186, X:Q.190, X:T.361, X:T.361, X:R.362, X:G.363, X:E.460
- Salt bridges: X:K.184, X:K.184
- 22 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.7: 5 residues within 4Å:- Chain 6: Q.374, G.375, T.377, F.378, Y.380
Ligand excluded by PLIPK.8: 6 residues within 4Å:- Chain 7: G.112, G.114, E.115, A.117, F.118, D.167
Ligand excluded by PLIPK.101: 3 residues within 4Å:- Chain a: C.257, G.259, A.484
Ligand excluded by PLIPK.102: 2 residues within 4Å:- Chain a: C.506, G.508
Ligand excluded by PLIPK.103: 5 residues within 4Å:- Chain a: C.523, U.526, G.527, U.538, A.540
Ligand excluded by PLIPK.104: 4 residues within 4Å:- Chain a: U.1055, G.1056, G.1066, C.1067
Ligand excluded by PLIPK.105: 4 residues within 4Å:- Chain a: U.797, A.798, A.799, A.800
Ligand excluded by PLIPK.106: 2 residues within 4Å:- Chain a: G.927, G.928
Ligand excluded by PLIPK.107: 2 residues within 4Å:- Chain a: A.977, G.997
Ligand excluded by PLIPK.108: 4 residues within 4Å:- Chain a: G.262, A.263, G.264, G.441
Ligand excluded by PLIPK.109: 1 residues within 4Å:- Chain a: G.66
Ligand excluded by PLIPK.110: 7 residues within 4Å:- Chain a: U.821, C.822, G.823, C.824, G.836, G.837, C.839
Ligand excluded by PLIPK.111: 5 residues within 4Å:- Chain a: C.822, C.824, G.835, G.836, G.837
Ligand excluded by PLIPK.112: 4 residues within 4Å:- Chain a: U.57, U.58, C.752, G.753
Ligand excluded by PLIPK.113: 5 residues within 4Å:- Chain a: G.982, G.983, A.984, U.990, A.991
Ligand excluded by PLIPK.114: 4 residues within 4Å:- Chain a: G.1029, U.1030, G.1046, U.1047
Ligand excluded by PLIPK.115: 2 residues within 4Å:- Chain a: A.1713, A.1714
Ligand excluded by PLIPK.116: 2 residues within 4Å:- Chain a: U.1715, G.1779
Ligand excluded by PLIPK.117: 6 residues within 4Å:- Chain K: S.283, N.286
- Chain a: G.885, A.886, A.901, U.902
Ligand excluded by PLIPK.118: 3 residues within 4Å:- Chain a: C.1636, G.1654, G.1655
Ligand excluded by PLIPK.119: 2 residues within 4Å:- Chain a: U.1429, A.1430
Ligand excluded by PLIPK.120: 3 residues within 4Å:- Chain a: A.1515, G.1588, G.1589
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Itoh, Y. et al., Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nat Commun (2020)
- Release Date
- 2020-11-11
- Peptides
- uS2m: A
Mito ribosomal protein S2: B
Ribosomal protein S5, mitochondrial: C
Mito ribosomal protein S4: D
37S ribosomal protein S5: E
Mito ribosomal protein S6: F
Ribosomal_S7 domain-containing protein: G
40S ribosomal protein S8: H
uS9m: I
37S ribosomal protein S10, mitochondrial: J
Mitochondrial ribosomal protein subunit S18: K
Mitochondrial 30S ribosomal protein S12: L
40S ribosomal protein S13: M
Mitochondrial 40S ribosomal protein MRP2: N
Ribosomal protein S15: O
Ribosomal protein S16, mitochondrial: P
Mitochondrial 37S ribosomal protein S17: Q
Mito ribosomal protein S18: R
Mitochondrial ribosomal protein S19: S
Mito ribosomal protein S21: T
37S ribosomal protein S25, mitochondrial: U
mS26: V
mS27: W
Mitochondrial ribosomal protein DAP3: X
mS33: Y
37S ribosomal protein S24, mitochondrial: Z
37S ribosomal protein mrp10, mitochondrial: 0
DUF1713 domain-containing protein: 1
IGR domain-containing protein: 2
Fe superoxide dismutase: 34
mS42: 5
mS46: 6
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial: 7
mS47: 89
IF1: b - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAB
BBC
CCD
DDE
EEF
FFG
GGH
HHI
IIJ
JJK
KKL
LLM
MMN
NNO
OOP
PPQ
QQR
RRS
SST
TTU
UUV
VVW
WWX
XXY
YYZ
ZZ0
111
222
333
444
555
666
777
888
009
99b
V
SMTL ID : 6yw5.1
The structure of the small subunit of the mitoribosome from Neurospora crassa
uS2m
Mito ribosomal protein S2
Ribosomal protein S5, mitochondrial
Mito ribosomal protein S4
37S ribosomal protein S5
Mito ribosomal protein S6
Ribosomal_S7 domain-containing protein
40S ribosomal protein S8
uS9m
37S ribosomal protein S10, mitochondrial
Mitochondrial ribosomal protein subunit S18
Mitochondrial 30S ribosomal protein S12
40S ribosomal protein S13
Mitochondrial 40S ribosomal protein MRP2
Ribosomal protein S15
Ribosomal protein S16, mitochondrial
Mitochondrial 37S ribosomal protein S17
Mito ribosomal protein S18
Mitochondrial ribosomal protein S19
Mito ribosomal protein S21
37S ribosomal protein S25, mitochondrial
mS26
mS27
Mitochondrial ribosomal protein DAP3
mS33
37S ribosomal protein S24, mitochondrial
37S ribosomal protein mrp10, mitochondrial
DUF1713 domain-containing protein
IGR domain-containing protein
Fe superoxide dismutase
mS42
mS46
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
mS47
IF1
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