SMTL ID : 6yx9.1

Cryogenic human adiponectin receptor 2 (ADIPOR2) at 2.4 A resolution determined by Serial Crystallography (SSX) using CrystalDirect

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: S.104, H.108, D.125, H.254, H.258 Ligands: OLA.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.108, A:H.254, A:H.258

5 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.2: 10 residues within 4Å: Chain A: S.37, F.38, R.39, F.42, L.106 Chain C: N.29, H.31, N.32, G.69, Y.72 12 PLIP interactions: 5 interactions with chain C, 7 interactions with chain A Hydrogen bonds: C:N.29, C:N.32, C:N.32, C:G.69, A:F.38 Salt bridges: C:H.31 Hydrophobic interactions: A:F.38, A:R.39, A:F.42, A:F.42, A:F.42, A:L.106 OLB.3: 8 residues within 4Å: Chain A: L.60, V.63, F.64, C.67, L.68, F.71, F.74, R.75 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.64, A:F.64, A:F.64, A:L.68, A:F.71, A:F.71, A:R.75 OLB.4: 10 residues within 4Å: Chain A: L.95, L.99, G.116, R.119, L.120, K.123, L.124, S.127, L.131, Q.171 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.95, A:L.99, A:K.123, A:L.124 Hydrogen bonds: A:Q.171 OLB.5: 11 residues within 4Å: Chain A: P.178, Q.179, R.181, G.182, A.185, I.228, A.231, A.232, A.235, R.237, R.241 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.185, A:I.228, A:I.228, A:A.232, A:A.235 Hydrogen bonds: A:R.181, A:R.237, A:R.241 OLB.6: 14 residues within 4Å: Chain A: S.136, G.192, G.195, I.196, T.199, L.200, F.208, I.217, L.220, M.221, M.223, Y.227, H.268 Ligands: OLA.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.196, A:T.199, A:L.200, A:L.220, A:L.220, A:Y.227

1 x OLA: OLEIC ACID(Non-covalent)

OLA.7: 18 residues within 4Å: Chain A: D.125, I.129, A.185, F.188, M.223, L.226, Y.227, A.231, Y.234, H.254, F.257, H.258, F.260, G.264, A.265, H.268 Ligands: ZN.1, OLB.6 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.129, A:F.188, A:F.188, A:Y.227, A:A.231, A:Y.234, A:Y.234, A:F.257, A:F.257, A:H.268 Water bridges: A:R.184, A:Y.234 Salt bridges: A:H.254

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain C: Q.38, K.40, Q.46, F.63, E.82, D.83 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.38, C:K.40, C:Q.46, C:Q.46, C:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Healey, R.D. et al., An automated platform for structural analysis of membrane proteins through serial crystallography. Cell Rep Methods (2021)

Release Date

2021-05-12

Peptides

Adiponectin receptor protein 2: A
V REGION HEAVY CHAIN: B
V REGION LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adiponectin receptor protein 2

V REGION HEAVY CHAIN

V REGION LIGHT CHAIN

Related Entries With Identical Sequence