SMTL ID : 6yxd.1

Room temperature structure of human adiponectin receptor 2 (ADIPOR2) at 2.9 A resolution determined by Serial Crystallography (SSX) using CrystalDirect

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: S.104, H.108, D.125, H.254, H.258 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.108, A:H.254, A:H.258, H2O.1

5 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLB.2: 1 residues within 4Å: Chain A: I.204 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.204, A:I.204 OLB.3: 5 residues within 4Å: Chain A: L.120, K.123, L.124, S.127, Q.171 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.123 OLB.4: 7 residues within 4Å: Chain A: P.178, Q.179, I.228, A.235, R.237, R.241 Ligands: OLB.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.228, A:A.235 Hydrogen bonds: A:R.181, A:R.237, A:R.241 OLB.6: 1 residues within 4Å: Ligands: OLB.4 No protein-ligand interaction detected (PLIP) OLB.7: 9 residues within 4Å: Chain A: S.37, F.38, R.39, F.42, L.106 Chain C: N.28, H.30, N.31, G.68 9 PLIP interactions: 3 interactions with chain C, 6 interactions with chain A Hydrogen bonds: C:N.28, C:N.31, C:G.68, A:F.38 Hydrophobic interactions: A:R.39, A:F.42, A:F.42, A:F.42, A:L.106

1 x OLA: OLEIC ACID(Non-covalent)

OLA.5: 14 residues within 4Å: Chain A: D.125, Y.126, I.129, R.184, A.185, F.188, L.189, L.226, Y.227, A.231, Y.234, F.257, A.265, H.268 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.129, A:F.188, A:F.188, A:Y.227, A:Y.227, A:A.231, A:Y.234, A:F.257, A:F.257, A:H.268 Hydrogen bonds: A:Y.234 Salt bridges: A:R.184

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 7 residues within 4Å: Chain C: Q.37, K.39, Q.45, P.59, F.62, E.81, D.82 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.37, C:K.39, C:Q.45, C:Q.45, C:D.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Healey, R.D. et al., An automated platform for structural analysis of membrane proteins through serial crystallography. Cell Rep Methods (2021)

Release Date

2021-05-12

Peptides

Adiponectin receptor protein 2: A
V REGION HEAVY CHAIN: B
V REGION LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
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Adiponectin receptor protein 2

V REGION HEAVY CHAIN

V REGION LIGHT CHAIN

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