SMTL ID : 6z28.1

Carboxypeptidase T mutant L254N with N-sulfamoyl-L-glutamic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.69, E.72, H.204, T.205 Ligands: 3K0.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204

1 x 3K0: N-sulfamoyl-L-glutamic acid(Non-covalent)

3K0.2: 15 residues within 4Å: Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, A.251, Y.255, T.257, D.260, T.275, E.277 Ligands: ZN.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.129, A:R.129, A:N.146, A:Y.255, A:T.257, A:D.260, A:T.262, A:E.277, A:E.277 Water bridges: A:R.71, A:N.254, A:N.254, A:D.263, A:T.275 Salt bridges: A:H.69, A:R.129, A:R.147

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.2, H2O.9 CA.4: 4 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.3 CA.5: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.8 CA.8: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.5, A:D.291, A:E.292, A:E.292, H2O.4

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: S.138, S.139, Y.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.139, A:Y.140 Water bridges: A:S.138 SO4.7: 5 residues within 4Å: Chain A: F.174, R.183, N.187, W.264, Q.268 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.187, A:N.187 Water bridges: A:R.183, A:W.264, A:Q.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., CARBOXYPEPTIDASE T MUTANT L254N WITH WITH N-SULFAMOYL-L-GLUT. To Be Published

Release Date

2020-05-27

Peptides

Carboxypeptidase T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase T

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