- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.28 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x BDF: beta-D-fructopyranose(Non-covalent)
BDF.2: 9 residues within 4Å:- Chain A: R.17, E.28, Y.37, G.39, A.40, F.41, I.61, W.76, W.81
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.17, A:E.28, A:Y.37, A:Y.37, A:A.40, A:F.41
BDF.7: 9 residues within 4Å:- Chain B: R.17, E.28, Y.37, G.39, A.40, F.41, I.61, W.76, W.81
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.17, B:E.28, B:Y.37, B:A.40, B:F.41
- Water bridges: B:Y.37
BDF.12: 9 residues within 4Å:- Chain C: R.17, E.28, Y.37, G.39, A.40, F.41, I.61, W.76, W.81
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.17, C:E.28, C:Y.37, C:A.40, C:F.41
- Water bridges: C:Y.37
- 6 x EVB: sulfonato-calix[8]arene(Non-covalent)
EVB.4: 11 residues within 4Å:- Chain A: G.24, K.25, A.40, N.42, E.43, P.44, W.74, G.80, W.81, T.82, K.83
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:K.25, A:N.42, A:P.44, A:W.74
- Hydrogen bonds: A:N.42, A:E.43, A:E.43, A:W.81, A:K.83
- Water bridges: A:N.42, A:N.42, A:N.42, A:N.42, A:N.42, A:N.42, A:E.43
- Salt bridges: A:K.25, A:K.83
- pi-Stacking: A:W.74, A:W.74
EVB.5: 7 residues within 4Å:- Chain A: T.12, V.13, D.32, G.33, K.34
- Chain B: V.55, H.60
10 PLIP interactions:3 interactions with chain B, 7 interactions with chain A- Water bridges: B:H.60, B:D.77, A:K.34
- Salt bridges: B:H.60, A:K.34, A:K.34
- Hydrophobic interactions: A:V.13, A:K.34
- Hydrogen bonds: A:G.33, A:G.33
EVB.9: 11 residues within 4Å:- Chain B: G.24, K.25, A.40, N.42, E.43, P.44, W.74, G.80, W.81, T.82, K.83
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:K.25, B:N.42, B:P.44, B:W.74
- Hydrogen bonds: B:N.42, B:E.43, B:E.43, B:W.81, B:K.83
- Water bridges: B:N.42, B:N.42, B:N.42, B:N.42, B:N.42, B:N.42, B:E.43
- Salt bridges: B:K.25, B:K.83
- pi-Stacking: B:W.74, B:W.74
EVB.10: 7 residues within 4Å:- Chain B: T.12, V.13, D.32, G.33, K.34
- Chain C: V.55, H.60
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:V.13, B:K.34
- Hydrogen bonds: B:G.33, B:G.33
- Water bridges: B:K.34, C:H.60, C:D.77
- Salt bridges: B:K.34, B:K.34, C:H.60
EVB.14: 11 residues within 4Å:- Chain C: G.24, K.25, A.40, N.42, E.43, P.44, W.74, G.80, W.81, T.82, K.83
20 PLIP interactions:20 interactions with chain C- Hydrophobic interactions: C:K.25, C:N.42, C:P.44, C:W.74
- Hydrogen bonds: C:N.42, C:E.43, C:E.43, C:W.81, C:K.83
- Water bridges: C:N.42, C:N.42, C:N.42, C:N.42, C:N.42, C:N.42, C:E.43
- Salt bridges: C:K.25, C:K.83
- pi-Stacking: C:W.74, C:W.74
EVB.15: 7 residues within 4Å:- Chain A: V.55, H.60
- Chain C: T.12, V.13, D.32, G.33, K.34
10 PLIP interactions:3 interactions with chain A, 7 interactions with chain C- Water bridges: A:H.60, A:D.77, C:K.34
- Salt bridges: A:H.60, C:K.34, C:K.34
- Hydrophobic interactions: C:V.13, C:K.34
- Hydrogen bonds: C:G.33, C:G.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramberg, K.O. et al., Facile Fabrication of Protein-Macrocycle Frameworks. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-04-14
- Peptides
- Fucose-binding lectin protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.28 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x BDF: beta-D-fructopyranose(Non-covalent)
- 6 x EVB: sulfonato-calix[8]arene(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramberg, K.O. et al., Facile Fabrication of Protein-Macrocycle Frameworks. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-04-14
- Peptides
- Fucose-binding lectin protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A