SMTL ID : 6z5r.1

RC-LH1(16) complex from Rhodopseudomonas palustris

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-16-16-1-1-1-mer

Ligands

36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 18 residues within 4Å: Chain A: F.18, F.22, A.25, H.29, W.40 Chain B: F.28, V.31, A.35, H.36, W.42 Chain X: F.20, I.27, I.28 Chain Y: L.46 Ligands: BCL.2, LMT.76, BCL.77, CRT.78 14 PLIP interactions: 4 interactions with chain X, 2 interactions with chain B, 1 interactions with chain Y, 7 interactions with chain A, Hydrophobic interactions: X:F.20, X:I.27, X:I.28, X:I.28, B:A.35, B:W.42, Y:L.46, A:F.18, A:F.22, A:W.40, A:W.40, A:W.40, A:W.40 pi-Stacking: A:H.29 BCL.2: 19 residues within 4Å: Chain A: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain B: F.25, F.28, I.29, A.32, H.36, W.45 Chain D: L.38 Ligands: BCL.1, CRT.3, 6PL.4, BCL.5, LMT.8 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A, Hydrophobic interactions: B:F.25, B:F.28, B:I.29, B:A.32, B:W.45, B:W.45, B:W.45, A:I.28, A:L.32, A:F.38 Metal complexes: B:H.36 BCL.5: 23 residues within 4Å: Chain A: F.20, I.28 Chain B: L.46 Chain C: F.18, V.19, F.22, A.25, H.29, W.40 Chain D: F.28, V.31, A.32, A.35, H.36, W.42 Chain L: L.44 Ligands: BCL.2, CRT.3, 6PL.6, CDL.7, LMT.8, BCL.9, 6PL.34 17 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 2 interactions with chain D, 11 interactions with chain C, Hydrophobic interactions: A:F.20, A:I.28, A:I.28, B:L.46, D:A.35, D:W.42, C:F.18, C:F.18, C:F.18, C:V.19, C:F.22, C:F.22, C:F.22, C:W.40, C:W.40, C:W.40, C:W.40 BCL.9: 18 residues within 4Å: Chain C: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain D: F.25, F.28, I.29, A.32, H.36, W.45 Ligands: BCL.5, 6PL.10, CRT.12, BCL.13, 6PL.16 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain C, Hydrophobic interactions: D:F.25, D:F.28, D:I.29, D:A.32, D:W.45, D:W.45, C:I.28, C:F.38 Metal complexes: D:H.36 BCL.13: 19 residues within 4Å: Chain C: F.20, I.28 Chain D: L.46 Chain E: F.18, F.22, A.25, H.29, W.40 Chain F: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: CDL.7, BCL.9, CRT.12, BCL.14, 6PL.16 14 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D, 9 interactions with chain E, 2 interactions with chain C, Hydrophobic interactions: F:A.35, F:W.42, D:L.46, E:F.18, E:F.18, E:F.22, E:W.40, E:W.40, E:W.40, E:W.40, E:W.40, C:F.20, C:I.28 pi-Stacking: E:H.29 BCL.14: 18 residues within 4Å: Chain E: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain F: F.25, F.28, I.29, A.32, H.36, W.45 Chain H: L.38 Ligands: BCL.13, CRT.17, 6PL.18, BCL.19 12 PLIP interactions: 9 interactions with chain F, 2 interactions with chain E, 1 interactions with chain H, Hydrophobic interactions: F:F.25, F:F.28, F:I.29, F:A.32, F:W.45, F:W.45, F:W.45, F:W.45, E:I.28, E:F.38, H:L.38 Metal complexes: F:H.36 BCL.19: 20 residues within 4Å: Chain E: F.20, I.28 Chain G: F.18, V.19, L.21, F.22, A.25, H.29, W.40 Chain H: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: CDL.11, BCL.14, CDL.15, CRT.17, BCL.21 17 PLIP interactions: 13 interactions with chain G, 2 interactions with chain H, 2 interactions with chain E, Hydrophobic interactions: G:F.18, G:V.19, G:L.21, G:F.22, G:F.22, G:F.22, G:A.25, G:W.40, G:W.40, G:W.40, G:W.40, H:A.35, H:W.42, E:F.20, E:I.28 pi-Stacking: G:H.29 Metal complexes: G:H.29 BCL.21: 18 residues within 4Å: Chain G: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain H: F.28, I.29, A.32, H.36, W.45 Chain J: L.38 Ligands: BCL.19, CRT.22, 6PL.23, BCL.24, LMT.26 12 PLIP interactions: 3 interactions with chain G, 2 interactions with chain J, 7 interactions with chain H, Hydrophobic interactions: G:I.28, G:L.32, G:F.38, J:L.38, J:L.38, H:F.28, H:I.29, H:A.32, H:W.45, H:W.45, H:W.45 Metal complexes: H:H.36 BCL.24: 21 residues within 4Å: Chain G: L.16, F.20, I.28 Chain H: L.46 Chain I: F.18, F.22, A.25, H.29, W.40 Chain J: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: CDL.15, BCL.21, CRT.22, BCL.25, LMT.26, CDL.48 14 PLIP interactions: 3 interactions with chain G, 1 interactions with chain H, 9 interactions with chain I, 1 interactions with chain J, Hydrophobic interactions: G:L.16, G:F.20, G:I.28, H:L.46, I:F.18, I:F.22, I:F.22, I:F.22, I:W.40, I:W.40, I:W.40, I:W.40, J:W.42 pi-Stacking: I:H.29 BCL.25: 18 residues within 4Å: Chain I: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain J: F.25, F.28, I.29, A.32, H.36, W.45 Chain U: L.38 Ligands: BCL.24, CRT.27, 6PL.28, BCL.65 11 PLIP interactions: 8 interactions with chain J, 2 interactions with chain I, 1 interactions with chain U, Hydrophobic interactions: J:F.25, J:F.28, J:I.29, J:A.32, J:W.45, J:W.45, J:W.45, I:I.28, I:F.38, U:L.38 Metal complexes: J:H.36 BCL.31: 23 residues within 4Å: Chain L: F.98, A.125, A.128, Y.129, L.132, V.158, T.161, F.168, H.169, H.174, A.177, I.178, F.181, S.245, A.246, M.249 Chain M: Y.197, Y.210 Ligands: CDL.7, BPH.32, BCL.38, BCL.42, BCL.44 13 PLIP interactions: 13 interactions with chain L, Hydrophobic interactions: L:F.98, L:F.98, L:A.125, L:A.128, L:V.158, L:T.161, L:F.168, L:A.177, L:I.178, L:I.178, L:F.181 Hydrogen bonds: L:S.245 Metal complexes: L:H.174 BCL.38: 20 residues within 4Å: Chain L: H.169, M.175, I.178, T.179, F.182, T.183, V.221, Y.223 Chain M: Y.157, L.160, V.179, H.182, L.183, T.186 Ligands: BCL.31, U10.33, U10.39, BCL.44, BPH.45, QAK.47 6 PLIP interactions: 4 interactions with chain L, 2 interactions with chain M, Hydrophobic interactions: L:I.178, L:I.178, L:V.221, L:Y.223, M:L.160, M:L.183 BCL.42: 20 residues within 4Å: Chain L: I.47, Y.129, L.132, F.147, I.151, F.152, H.154, L.155 Chain M: Y.197, C.203, I.206, A.207, Y.210, G.211, L.214 Ligands: CDL.7, 6PL.29, BCL.31, BPH.32, BCL.44 11 PLIP interactions: 6 interactions with chain L, 5 interactions with chain M, Hydrophobic interactions: L:I.47, L:Y.129, L:L.132, L:F.147, L:L.155, M:Y.197, M:I.206, M:I.206, M:L.214 Metal complexes: L:H.154 pi-Stacking: M:Y.210 BCL.44: 26 residues within 4Å: Chain L: F.182 Chain M: L.122, I.126, F.150, A.153, L.156, Y.157, L.160, T.186, N.187, F.189, S.190, L.196, Y.197, H.202, S.205, I.206, Y.210, G.280, I.284 Ligands: BCL.31, BCL.38, U10.39, BCL.42, BPH.45, QAK.47 12 PLIP interactions: 12 interactions with chain M, Hydrophobic interactions: M:L.122, M:I.126, M:F.150, M:A.153, M:L.156, M:Y.157, M:T.186, M:F.189, M:Y.197, M:Y.197, M:I.206 Metal complexes: M:H.202 BCL.51: 19 residues within 4Å: Chain N: F.18, F.22, A.25, H.29, W.40 Chain O: F.28, V.31, A.32, A.35, H.36, W.42 Chain T: F.20, I.28 Chain U: L.46 Ligands: CDL.49, BCL.53, 6PL.66, BCL.67, CRT.68 14 PLIP interactions: 10 interactions with chain N, 2 interactions with chain O, 1 interactions with chain U, 1 interactions with chain T, Hydrophobic interactions: N:F.18, N:F.18, N:F.22, N:F.22, N:W.40, N:W.40, N:W.40, N:W.40, O:A.35, O:W.42, U:L.46, T:F.20 pi-Stacking: N:H.29 Metal complexes: N:H.29 BCL.53: 17 residues within 4Å: Chain N: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain O: F.28, I.29, A.32, H.36, W.45 Chain Q: L.38 Ligands: BCL.51, CRT.54, 6PL.55, BCL.56 10 PLIP interactions: 3 interactions with chain N, 6 interactions with chain O, 1 interactions with chain Q, Hydrophobic interactions: N:I.28, N:L.32, N:F.38, O:F.28, O:I.29, O:A.32, O:W.45, O:W.45, Q:L.38 Metal complexes: O:H.36 BCL.56: 24 residues within 4Å: Chain M: F.55, C.59, L.128 Chain N: L.16, F.20, I.28 Chain O: L.46 Chain P: F.18, V.19, L.21, F.22, A.25, H.29, W.40 Chain Q: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: U10.50, BCL.53, CRT.54, BCL.57 19 PLIP interactions: 4 interactions with chain N, 9 interactions with chain P, 3 interactions with chain Q, 1 interactions with chain O, 2 interactions with chain M, Hydrophobic interactions: N:F.20, N:F.20, N:I.28, N:I.28, P:F.18, P:F.18, P:V.19, P:L.21, P:F.22, P:W.40, P:W.40, P:W.40, P:W.40, Q:F.28, Q:A.35, Q:W.42, O:L.46, M:F.55, M:L.128 BCL.57: 18 residues within 4Å: Chain P: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain Q: F.25, F.28, I.29, A.32, H.36, W.45 Chain S: L.38 Ligands: BCL.56, CRT.58, 6PL.59, BCL.60 11 PLIP interactions: 8 interactions with chain Q, 2 interactions with chain P, 1 interactions with chain S, Hydrophobic interactions: Q:F.25, Q:F.28, Q:I.29, Q:A.32, Q:W.45, Q:W.45, Q:W.45, P:I.28, P:F.38, S:L.38 Metal complexes: Q:H.36 BCL.60: 19 residues within 4Å: Chain M: L.62 Chain P: L.16, F.20, I.28 Chain Q: L.46 Chain R: F.18, V.19, A.25, H.29, W.40 Chain S: F.28, A.32, A.35, H.36, W.42 Ligands: U10.50, BCL.57, CRT.58, BCL.61 13 PLIP interactions: 3 interactions with chain P, 6 interactions with chain R, 2 interactions with chain S, 1 interactions with chain M, 1 interactions with chain Q, Hydrophobic interactions: P:L.16, P:F.20, P:I.28, R:F.18, R:F.18, R:V.19, R:W.40, R:W.40, R:W.40, S:A.35, S:W.42, M:L.62, Q:L.46 BCL.61: 18 residues within 4Å: Chain R: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain S: F.28, I.29, A.32, H.36, W.45 Chain W: L.38 Ligands: BCL.60, CRT.62, 6PL.63, BCL.70, LMT.72 10 PLIP interactions: 3 interactions with chain R, 6 interactions with chain S, 1 interactions with chain W, Hydrophobic interactions: R:I.28, R:L.32, R:F.38, S:F.28, S:I.29, S:A.32, S:W.45, S:W.45, W:L.38 Metal complexes: S:H.36 BCL.65: 21 residues within 4Å: Chain I: F.20, I.28 Chain J: L.46 Chain T: F.18, V.19, L.21, F.22, A.25, H.29, W.40 Chain U: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: BCL.25, CRT.27, CDL.49, 6PL.66, BCL.67 13 PLIP interactions: 8 interactions with chain T, 2 interactions with chain I, 1 interactions with chain J, 2 interactions with chain U, Hydrophobic interactions: T:F.18, T:F.18, T:V.19, T:L.21, T:F.22, T:W.40, T:W.40, T:W.40, I:F.20, I:I.28, J:L.46, U:A.35, U:W.42 BCL.67: 16 residues within 4Å: Chain O: L.38 Chain T: L.21, L.24, A.25, I.28, H.29, L.32 Chain U: F.28, I.29, A.32, H.36, W.45 Ligands: BCL.51, BCL.65, CRT.68, 6PL.69 8 PLIP interactions: 6 interactions with chain U, 1 interactions with chain T, 1 interactions with chain O, Hydrophobic interactions: U:F.28, U:I.29, U:A.32, U:W.45, U:W.45, T:I.28, O:L.38 Metal complexes: U:H.36 BCL.70: 18 residues within 4Å: Chain R: L.16, F.20, I.28 Chain S: L.46 Chain V: F.18, F.22, H.29, W.40 Chain W: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: BCL.61, CRT.62, BCL.71, LMT.72 15 PLIP interactions: 1 interactions with chain S, 2 interactions with chain W, 5 interactions with chain R, 7 interactions with chain V, Hydrophobic interactions: S:L.46, W:A.35, W:W.42, R:F.20, R:F.20, R:F.20, R:I.28, R:I.28, V:F.18, V:F.22, V:W.40, V:W.40, V:W.40, V:W.40 pi-Stacking: V:H.29 BCL.71: 19 residues within 4Å: Chain 0: L.38 Chain V: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain W: F.28, I.29, A.32, H.36, W.45 Chain Z: L.41 Ligands: BCL.70, CRT.73, 6PL.74, BCL.80, LMT.82 9 PLIP interactions: 6 interactions with chain W, 2 interactions with chain V, 1 interactions with chain Z, Hydrophobic interactions: W:F.28, W:I.29, W:A.32, W:W.45, W:W.45, V:I.28, V:F.38, Z:L.41 Metal complexes: W:H.36 BCL.75: 22 residues within 4Å: Chain 7: L.17, F.20, L.21, L.24, I.28 Chain X: F.18, V.19, F.22, A.25, H.29, W.40 Chain Y: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: CDL.40, BCL.77, BCL.103, CRT.104, 6PL.105 17 PLIP interactions: 2 interactions with chain Y, 4 interactions with chain 7, 11 interactions with chain X, Hydrophobic interactions: Y:A.35, Y:W.42, 7:L.17, 7:F.20, 7:L.24, 7:I.28, X:F.18, X:V.19, X:F.22, X:F.22, X:F.22, X:A.25, X:W.40, X:W.40, X:W.40, X:W.40 pi-Stacking: X:H.29 BCL.77: 17 residues within 4Å: Chain X: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain Y: F.28, I.29, A.32, H.36, W.45 Ligands: BCL.1, BCL.75, LMT.76, CRT.78, 6PL.79 11 PLIP interactions: 7 interactions with chain Y, 4 interactions with chain X, Hydrophobic interactions: Y:F.28, Y:I.29, Y:A.32, Y:W.45, Y:W.45, Y:W.45, X:I.28, X:I.28, X:L.32, X:F.38 Metal complexes: Y:H.36 BCL.80: 18 residues within 4Å: Chain 0: F.28, V.31, A.32, A.35, H.36, W.42 Chain V: A.13, F.20, I.28 Chain W: L.46 Chain Z: F.18, A.25, H.29, W.40 Ligands: BCL.71, CRT.73, BCL.81, LMT.82 15 PLIP interactions: 8 interactions with chain Z, 4 interactions with chain V, 2 interactions with chain 0, 1 interactions with chain W, Hydrophobic interactions: Z:F.18, Z:F.18, Z:F.18, Z:W.40, Z:W.40, Z:W.40, Z:W.40, V:F.20, V:F.20, V:I.28, V:I.28, 0:A.35, 0:W.42, W:L.46 pi-Stacking: Z:H.29 BCL.81: 18 residues within 4Å: Chain 0: F.28, I.29, A.32, H.36, W.45 Chain 2: L.38 Chain Z: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Ligands: BCL.80, CRT.83, 6PL.84, BCL.85, LMT.86 10 PLIP interactions: 7 interactions with chain 0, 3 interactions with chain Z, Hydrophobic interactions: 0:F.28, 0:I.29, 0:A.32, 0:W.45, 0:W.45, 0:W.45, Z:I.28, Z:L.32, Z:F.38 Metal complexes: 0:H.36 BCL.85: 19 residues within 4Å: Chain 0: L.46 Chain 1: F.18, A.25, H.29, W.40 Chain 2: F.28, V.31, A.32, A.35, H.36, W.42 Chain Z: L.16, L.17, F.20, I.28 Ligands: BCL.81, CRT.83, LMT.86, BCL.87 14 PLIP interactions: 4 interactions with chain Z, 6 interactions with chain 1, 3 interactions with chain 2, 1 interactions with chain 0, Hydrophobic interactions: Z:L.16, Z:F.20, Z:I.28, Z:I.28, 1:F.18, 1:F.18, 1:W.40, 1:W.40, 1:W.40, 1:W.40, 2:F.28, 2:A.35, 2:W.42, 0:L.46 BCL.87: 17 residues within 4Å: Chain 1: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain 2: F.28, I.29, A.32, H.36, W.45 Ligands: BCL.85, CRT.88, 6PL.89, BCL.90, LMT.93 9 PLIP interactions: 7 interactions with chain 2, 2 interactions with chain 1, Hydrophobic interactions: 2:F.28, 2:I.29, 2:A.32, 2:W.45, 2:W.45, 2:W.45, 1:I.28, 1:F.38 Metal complexes: 2:H.36 BCL.90: 19 residues within 4Å: Chain 1: L.17, F.20, I.28 Chain 2: F.21 Chain 3: F.18, F.22, A.25, H.29, W.40 Chain 4: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: BCL.87, CRT.88, BCL.92, LMT.93 8 PLIP interactions: 1 interactions with chain 2, 2 interactions with chain 1, 1 interactions with chain 4, 4 interactions with chain 3, Hydrophobic interactions: 2:F.21, 1:F.20, 1:I.28, 4:W.42, 3:F.18, 3:W.40, 3:W.40, 3:W.40 BCL.92: 16 residues within 4Å: Chain 3: L.21, L.24, A.25, I.28, H.29, L.32 Chain 4: F.25, F.28, I.29, A.32, H.36, W.45 Ligands: BCL.90, 6PL.94, CRT.95, BCL.96 9 PLIP interactions: 8 interactions with chain 4, 1 interactions with chain 3, Hydrophobic interactions: 4:F.25, 4:F.28, 4:I.29, 4:A.32, 4:W.45, 4:W.45, 4:W.45, 3:I.28 Metal complexes: 4:H.36 BCL.96: 19 residues within 4Å: Chain 3: L.16, F.20, I.28 Chain 4: L.46 Chain 5: F.18, L.21, F.22, A.25, H.29, W.40 Chain 6: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: BCL.92, CRT.95, BCL.98 12 PLIP interactions: 6 interactions with chain 5, 3 interactions with chain 3, 2 interactions with chain 6, 1 interactions with chain 4, Hydrophobic interactions: 5:F.18, 5:L.21, 5:F.22, 5:W.40, 5:W.40, 5:W.40, 3:F.20, 3:F.20, 3:I.28, 6:A.35, 6:W.42, 4:L.46 BCL.98: 20 residues within 4Å: Chain 5: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain 6: F.25, F.28, I.29, A.32, H.36, W.45 Chain 8: V.31, A.35, L.38 Ligands: BCL.96, CRT.99, 6PL.100, BCL.102 15 PLIP interactions: 9 interactions with chain 6, 3 interactions with chain 5, 3 interactions with chain 8, Hydrophobic interactions: 6:F.25, 6:F.28, 6:I.29, 6:A.32, 6:W.45, 6:W.45, 6:W.45, 6:W.45, 5:I.28, 5:L.32, 5:F.38, 8:V.31, 8:A.35, 8:L.38 Metal complexes: 6:H.36 BCL.102: 22 residues within 4Å: Chain 5: A.13, F.20, I.28 Chain 6: W.45, L.46 Chain 7: F.18, L.21, F.22, A.25, H.29, W.40 Chain 8: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: U10.37, BCL.98, CRT.99, PGT.101, BCL.103 18 PLIP interactions: 11 interactions with chain 7, 4 interactions with chain 5, 2 interactions with chain 8, 1 interactions with chain 6, Hydrophobic interactions: 7:F.18, 7:F.18, 7:F.22, 7:A.25, 7:W.40, 7:W.40, 7:W.40, 7:W.40, 5:A.13, 5:F.20, 5:F.20, 5:I.28, 8:A.35, 8:W.42, 6:L.46 pi-Stacking: 7:H.29, 7:H.29 Metal complexes: 7:H.29 BCL.103: 16 residues within 4Å: Chain 7: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain 8: F.28, I.29, A.32, H.36, W.45 Ligands: BCL.75, BCL.102, CRT.104, 6PL.105 8 PLIP interactions: 6 interactions with chain 8, 2 interactions with chain 7, Hydrophobic interactions: 8:F.28, 8:I.29, 8:A.32, 8:W.45, 8:W.45, 7:I.28, 7:F.38 Metal complexes: 8:H.36

16 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.3: 20 residues within 4Å: Chain A: L.14, L.17, L.21, L.24, I.28 Chain B: F.17, I.20, F.21, S.24, F.25 Chain C: F.22, A.25, I.26, H.29, F.30 Chain X: R.3, I.4, L.7 Ligands: BCL.2, BCL.5 19 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C, 6 interactions with chain A, 3 interactions with chain X Hydrophobic interactions: B:F.17, B:F.17, B:I.20, B:I.20, B:F.21, B:F.21, B:F.25, B:F.25, C:A.25, C:H.29, A:L.14, A:L.14, A:L.17, A:L.21, A:L.24, A:I.28, X:R.3, X:I.4, X:L.7 CRT.12: 22 residues within 4Å: Chain A: M.1, R.3, I.4, L.7 Chain C: L.14, L.17, F.20, L.21, L.24, I.28 Chain D: E.16, F.17, I.20, F.21, S.24, F.25 Chain E: A.25, I.26, H.29, F.30 Ligands: BCL.9, BCL.13 22 PLIP interactions: 8 interactions with chain D, 4 interactions with chain A, 3 interactions with chain E, 7 interactions with chain C Hydrophobic interactions: D:F.17, D:F.17, D:I.20, D:F.21, D:F.21, D:F.21, D:F.25, A:R.3, A:I.4, A:L.7, A:L.7, E:A.25, E:I.26, E:H.29, C:L.14, C:L.17, C:F.20, C:F.20, C:L.21, C:L.24, C:I.28 Hydrogen bonds: D:E.16 CRT.17: 20 residues within 4Å: Chain C: R.3, I.4, L.6 Chain E: L.17, F.20, L.21, L.24, I.28 Chain F: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain G: F.22, H.29, F.30 Ligands: BCL.14, BCL.19 15 PLIP interactions: 2 interactions with chain C, 7 interactions with chain F, 5 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: C:I.4, C:L.6, F:F.17, F:I.20, F:I.20, F:F.21, F:F.21, F:F.25, F:F.25, E:L.17, E:F.20, E:L.21, E:L.24, E:I.28, G:F.22 CRT.22: 20 residues within 4Å: Chain E: M.1, R.3, I.4 Chain G: L.17, L.21, L.24, I.28 Chain H: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain I: F.22, I.26, H.29, F.30 Ligands: BCL.21, BCL.24 18 PLIP interactions: 3 interactions with chain I, 9 interactions with chain H, 2 interactions with chain E, 4 interactions with chain G Hydrophobic interactions: I:F.22, I:I.26, I:H.29, H:F.17, H:F.17, H:I.20, H:I.20, H:F.21, H:F.21, H:F.25, H:F.25, H:F.25, E:R.3, E:I.4, G:L.17, G:L.21, G:L.24, G:I.28 CRT.27: 19 residues within 4Å: Chain G: R.3, I.4, L.7 Chain I: L.14, L.17, L.21, L.24, I.28 Chain J: E.13, F.17, I.20, F.21, S.24, F.25 Chain T: I.26, H.29, F.30 Ligands: BCL.25, BCL.65 16 PLIP interactions: 5 interactions with chain I, 1 interactions with chain T, 7 interactions with chain J, 3 interactions with chain G Hydrophobic interactions: I:L.14, I:L.17, I:L.21, I:L.24, I:I.28, T:H.29, J:F.17, J:F.17, J:I.20, J:I.20, J:F.21, J:F.21, J:F.25, G:R.3, G:I.4, G:L.7 CRT.54: 23 residues within 4Å: Chain N: L.14, L.17, F.18, F.20, L.21, L.24, I.28, I.31 Chain O: F.17, I.20, F.21, S.24, F.25 Chain P: F.22, A.25, I.26, H.29, F.30 Chain T: R.3, I.4, L.7 Ligands: BCL.53, BCL.56 22 PLIP interactions: 10 interactions with chain N, 6 interactions with chain O, 4 interactions with chain P, 2 interactions with chain T Hydrophobic interactions: N:L.14, N:L.17, N:F.18, N:F.20, N:F.20, N:L.21, N:L.21, N:L.24, N:I.28, N:I.31, O:F.17, O:F.17, O:I.20, O:F.21, O:F.21, O:F.25, P:F.22, P:A.25, P:I.26, P:H.29, T:R.3, T:I.4 CRT.58: 24 residues within 4Å: Chain N: R.3, I.4, L.6, L.7 Chain P: L.14, L.17, L.21, L.24, I.28, I.31 Chain Q: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain R: F.22, A.25, I.26, H.29 Ligands: U10.50, BCL.57, BCL.60 23 PLIP interactions: 7 interactions with chain Q, 8 interactions with chain P, 4 interactions with chain N, 4 interactions with chain R Hydrophobic interactions: Q:F.17, Q:I.20, Q:I.20, Q:F.21, Q:F.21, Q:F.25, Q:F.25, P:L.14, P:L.14, P:L.17, P:L.21, P:L.21, P:L.24, P:I.28, P:I.31, N:R.3, N:I.4, N:L.6, N:L.7, R:F.22, R:A.25, R:I.26, R:H.29 CRT.62: 23 residues within 4Å: Chain P: R.3, I.4, L.6, L.7 Chain R: L.14, L.17, F.20, L.21, I.28 Chain S: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain V: F.22, I.26, H.29, F.30, W.40 Ligands: BCL.61, BCL.70 20 PLIP interactions: 5 interactions with chain P, 5 interactions with chain R, 7 interactions with chain S, 3 interactions with chain V Hydrophobic interactions: P:R.3, P:I.4, P:L.6, P:L.7, P:L.7, R:L.14, R:L.17, R:F.20, R:L.21, R:I.28, S:F.17, S:F.17, S:I.20, S:I.20, S:F.21, S:F.25, S:F.25, V:F.22, V:H.29, V:W.40 CRT.68: 16 residues within 4Å: Chain I: R.3, I.4, L.7 Chain N: I.26, H.29 Chain T: L.17, L.24, I.28 Chain U: E.16, F.17, I.20, F.21, S.24, F.25 Ligands: BCL.51, BCL.67 13 PLIP interactions: 7 interactions with chain U, 3 interactions with chain T, 2 interactions with chain I, 1 interactions with chain N Hydrophobic interactions: U:F.17, U:F.17, U:I.20, U:I.20, U:F.21, U:F.21, U:F.25, T:L.17, T:L.24, T:I.28, I:R.3, I:I.4, N:H.29 CRT.73: 24 residues within 4Å: Chain R: R.3, I.4, L.7 Chain V: L.17, F.20, L.21, L.24, I.28, I.31 Chain W: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain Z: F.22, A.25, I.26, H.29, F.30, W.40 Ligands: BCL.71, BCL.80 20 PLIP interactions: 5 interactions with chain V, 2 interactions with chain R, 5 interactions with chain Z, 8 interactions with chain W Hydrophobic interactions: V:L.17, V:F.20, V:L.21, V:L.24, V:I.28, R:R.3, R:I.4, Z:F.22, Z:A.25, Z:I.26, Z:H.29, Z:W.40, W:F.17, W:F.17, W:I.20, W:I.20, W:F.21, W:F.21, W:F.25, W:F.25 CRT.78: 23 residues within 4Å: Chain 7: R.3, I.4, L.7 Chain A: F.22, A.25, I.26, H.29, F.30 Chain X: L.14, L.17, F.18, F.20, L.24, I.28, I.31 Chain Y: F.17, I.20, F.21, S.24, F.25, F.28 Ligands: BCL.1, BCL.77 20 PLIP interactions: 3 interactions with chain A, 7 interactions with chain X, 8 interactions with chain Y, 2 interactions with chain 7 Hydrophobic interactions: A:F.22, A:A.25, A:H.29, X:L.14, X:L.17, X:F.18, X:F.20, X:L.24, X:I.28, X:I.31, Y:F.17, Y:F.17, Y:I.20, Y:I.20, Y:F.21, Y:F.21, Y:F.25, Y:F.28, 7:R.3, 7:L.7 CRT.83: 22 residues within 4Å: Chain 0: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain 1: F.22, I.26, H.29, F.30 Chain V: I.4, L.6, L.7 Chain Z: L.17, F.20, L.21, L.24, I.28, I.31 Ligands: BCL.81, BCL.85 21 PLIP interactions: 7 interactions with chain Z, 5 interactions with chain V, 7 interactions with chain 0, 2 interactions with chain 1 Hydrophobic interactions: Z:L.17, Z:L.17, Z:F.20, Z:L.21, Z:L.21, Z:L.24, Z:I.28, V:I.4, V:I.4, V:L.6, V:L.7, V:L.7, 0:F.17, 0:F.17, 0:I.20, 0:F.21, 0:F.21, 0:F.25, 0:F.25, 1:F.22, 1:H.29 CRT.88: 21 residues within 4Å: Chain 1: L.14, L.17, L.21, L.24, I.28 Chain 2: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain 3: I.26, H.29, F.30 Chain Z: M.1, R.3, I.4, L.7 Ligands: BCL.87, BCL.90 17 PLIP interactions: 4 interactions with chain Z, 7 interactions with chain 2, 5 interactions with chain 1, 1 interactions with chain 3 Hydrophobic interactions: Z:R.3, Z:I.4, Z:I.4, Z:L.7, 2:E.16, 2:F.17, 2:F.17, 2:I.20, 2:F.21, 2:F.25, 2:F.25, 1:L.14, 1:L.17, 1:L.21, 1:L.24, 1:I.28, 3:H.29 CRT.95: 19 residues within 4Å: Chain 1: R.3, I.4, L.7 Chain 3: L.17, L.21, L.24, I.28 Chain 4: E.13, F.17, I.20, F.21, S.24, F.25 Chain 5: A.25, I.26, H.29, F.30 Ligands: BCL.92, BCL.96 16 PLIP interactions: 6 interactions with chain 4, 4 interactions with chain 3, 4 interactions with chain 1, 2 interactions with chain 5 Hydrophobic interactions: 4:F.17, 4:I.20, 4:I.20, 4:F.21, 4:F.21, 4:F.25, 3:L.17, 3:L.21, 3:L.24, 3:I.28, 1:R.3, 1:I.4, 1:L.7, 1:L.7, 5:A.25, 5:H.29 CRT.99: 18 residues within 4Å: Chain 3: M.1, R.3, I.4, L.7 Chain 5: L.21, L.24, I.28 Chain 6: L.9, E.13, F.17, I.20, F.21, S.24, F.25 Chain 7: H.29 Ligands: BCL.98, PGT.101, BCL.102 17 PLIP interactions: 4 interactions with chain 5, 1 interactions with chain 7, 9 interactions with chain 6, 3 interactions with chain 3 Hydrophobic interactions: 5:L.21, 5:L.21, 5:L.24, 5:I.28, 7:H.29, 6:L.9, 6:F.17, 6:I.20, 6:I.20, 6:F.21, 6:F.21, 6:F.25, 6:F.25, 6:F.25, 3:R.3, 3:I.4, 3:I.4 CRT.104: 20 residues within 4Å: Chain 5: R.3, I.4 Chain 7: P.10, L.14, L.17, F.18, I.28 Chain 8: F.17, F.21, S.24, F.25 Chain X: F.22, A.25, I.26, H.29, F.30, W.40 Ligands: CDL.40, BCL.75, BCL.103 16 PLIP interactions: 5 interactions with chain 7, 5 interactions with chain X, 4 interactions with chain 8, 2 interactions with chain 5 Hydrophobic interactions: 7:P.10, 7:L.14, 7:L.17, 7:F.18, 7:I.28, X:F.22, X:A.25, X:I.26, X:H.29, X:W.40, 8:F.17, 8:F.21, 8:F.21, 8:F.25, 5:R.3, 5:I.4

24 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

6PL.4: 9 residues within 4Å: Chain B: H.36, I.37, W.40, M.41, P.44, W.45, L.46 Ligands: BCL.2, LMT.8 Ligand excluded by PLIP 6PL.6: 21 residues within 4Å: Chain A: F.8, R.12, A.13, L.16 Chain B: F.21 Chain C: R.11, R.12, V.15, V.19 Chain K: W.91, P.92 Chain L: F.25, W.26, V.27, G.28, L.44, I.47 Ligands: BCL.5, CDL.7, BPH.32, U10.46 Ligand excluded by PLIP 6PL.10: 9 residues within 4Å: Chain D: V.33, H.36, I.37, W.40, M.41, P.44, W.45 Ligands: BCL.9, 6PL.16 Ligand excluded by PLIP 6PL.16: 11 residues within 4Å: Chain D: L.46 Chain F: V.31, A.35, L.38, A.39, M.41, W.42 Ligands: BCL.9, 6PL.10, BCL.13, 6PL.18 Ligand excluded by PLIP 6PL.18: 10 residues within 4Å: Chain F: H.36, I.37, W.40, M.41, P.44, W.45, L.46, Y.52 Ligands: BCL.14, 6PL.16 Ligand excluded by PLIP 6PL.23: 7 residues within 4Å: Chain H: H.36, W.40, M.41, P.44, L.46 Ligands: BCL.21, LMT.26 Ligand excluded by PLIP 6PL.28: 9 residues within 4Å: Chain J: V.33, H.36, W.40, W.45, L.46 Chain U: L.38, M.41, W.42 Ligands: BCL.25 Ligand excluded by PLIP 6PL.29: 19 residues within 4Å: Chain K: Y.6, Q.11, L.14, Y.15, W.18, F.21, L.25 Chain L: N.61, W.63 Chain M: P.200, W.297, H.301, L.303 Ligands: CDL.7, CDL.15, LMT.20, LMT.30, 6PL.35, BCL.42 Ligand excluded by PLIP 6PL.34: 19 residues within 4Å: Chain C: I.26, I.27, F.30, I.31 Chain E: F.30, L.33, D.42, A.46 Chain L: I.47, A.48, A.51, P.58, W.60, L.62, I.65, Y.149 Ligands: BCL.5, CDL.7, 6PL.35 Ligand excluded by PLIP 6PL.35: 14 residues within 4Å: Chain E: F.22, G.23, I.26, I.27, F.30, S.34, A.46 Chain L: N.61, L.62, W.63 Ligands: CDL.11, LMT.20, 6PL.29, 6PL.34 Ligand excluded by PLIP 6PL.41: 21 residues within 4Å: Chain I: I.26, I.27, F.30, I.31, S.34 Chain K: M.1, P.3, L.9, V.12, T.13, V.16, F.17 Chain M: L.167, I.282, I.285, L.286, G.288, P.289, V.290 Ligands: CDL.48, 6PL.66 Ligand excluded by PLIP 6PL.55: 7 residues within 4Å: Chain O: H.36, I.37, W.40, P.44, W.45, L.46 Ligands: BCL.53 Ligand excluded by PLIP 6PL.59: 7 residues within 4Å: Chain Q: V.33, H.36, W.40, M.41, L.46, Y.52 Ligands: BCL.57 Ligand excluded by PLIP 6PL.63: 9 residues within 4Å: Chain S: H.36, I.37, W.40, M.41, W.42, R.43, P.44, L.46 Ligands: BCL.61 Ligand excluded by PLIP 6PL.66: 17 residues within 4Å: Chain I: I.27, I.31 Chain M: L.155, I.163, L.167, I.285 Chain T: G.23, I.26, I.27, F.30, S.34, R.45 Ligands: 6PL.41, CDL.48, BCL.51, LMT.64, BCL.65 Ligand excluded by PLIP 6PL.69: 4 residues within 4Å: Chain U: V.33, H.36, W.40 Ligands: BCL.67 Ligand excluded by PLIP 6PL.74: 5 residues within 4Å: Chain W: H.36, W.40, M.41, K.48 Ligands: BCL.71 Ligand excluded by PLIP 6PL.79: 10 residues within 4Å: Chain Y: A.32, V.33, H.36, W.40, M.41, P.44, W.45, L.46 Ligands: LMT.76, BCL.77 Ligand excluded by PLIP 6PL.84: 6 residues within 4Å: Chain 0: V.33, H.36, W.40, L.46 Chain 2: V.31 Ligands: BCL.81 Ligand excluded by PLIP 6PL.89: 11 residues within 4Å: Chain 2: V.33, H.36, I.37, W.40, M.41, P.44, L.46, K.48, Y.52 Ligands: BCL.87, LMT.93 Ligand excluded by PLIP 6PL.91: 11 residues within 4Å: Chain 1: G.23, I.27, S.34, T.35 Chain 3: F.22, I.27, F.30, L.33, S.34, N.39, D.42 Ligand excluded by PLIP 6PL.94: 8 residues within 4Å: Chain 4: I.29, A.32, H.36, W.40, P.44, L.46 Ligands: BCL.92, LMT.93 Ligand excluded by PLIP 6PL.100: 6 residues within 4Å: Chain 6: H.36, I.37, W.40, M.41, W.45 Ligands: BCL.98 Ligand excluded by PLIP 6PL.105: 10 residues within 4Å: Chain 8: V.33, H.36, W.40, M.41, L.46 Chain Y: A.35, L.38, W.42 Ligands: BCL.75, BCL.103 Ligand excluded by PLIP

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.7: 27 residues within 4Å: Chain C: R.12, V.15, L.16 Chain K: R.29, K.33, Y.37, L.39, K.51, G.53 Chain L: A.2, V.27, G.28, P.29, F.30 Chain M: R.253, M.256, G.257, F.258 Ligands: BCL.5, 6PL.6, CDL.11, BCL.13, 6PL.29, BCL.31, 6PL.34, BCL.42, U10.46 12 PLIP interactions: 4 interactions with chain C, 4 interactions with chain K, 2 interactions with chain L, 2 interactions with chain M Hydrophobic interactions: C:V.15, C:L.16, L:F.30, M:F.258 Salt bridges: C:R.12, C:R.12, K:K.33, K:K.51, M:R.253 Hydrogen bonds: K:R.29, K:Y.37, L:A.2 CDL.11: 27 residues within 4Å: Chain C: M.1, F.8, D.9, A.13, L.16 Chain D: H.18, F.21, V.22 Chain E: R.12, V.15, L.16, V.19, F.20, G.23, L.24, I.27 Chain G: F.22, I.26 Chain K: K.51, I.52, G.53, V.54 Ligands: CDL.7, CDL.15, BCL.19, LMT.20, 6PL.35 23 PLIP interactions: 5 interactions with chain C, 7 interactions with chain E, 6 interactions with chain K, 2 interactions with chain G, 3 interactions with chain D Hydrophobic interactions: C:F.8, C:F.8, C:A.13, C:L.16, E:V.15, E:L.16, E:V.19, E:F.20, E:L.24, E:I.27, K:V.54, G:F.22, G:I.26, D:F.21, D:F.21, D:V.22 Hydrogen bonds: C:D.9, K:I.52, K:G.53, K:V.54 Salt bridges: E:R.12, K:K.51, K:K.51 CDL.15: 31 residues within 4Å: Chain E: F.8, D.9, R.12, A.13, L.16 Chain G: R.11, R.12, V.15, F.18, V.19, F.20, L.24, I.26, I.27 Chain I: F.22, I.26 Chain K: Y.15, W.18, I.19, A.22, F.26, R.30, V.54, A.56 Ligands: CDL.11, BCL.19, LMT.20, BCL.24, 6PL.29, LMT.30, CDL.48 24 PLIP interactions: 10 interactions with chain K, 2 interactions with chain I, 10 interactions with chain G, 2 interactions with chain E Hydrophobic interactions: K:Y.15, K:W.18, K:A.22, K:F.26, K:F.26, K:F.26, K:V.54, I:F.22, I:I.26, G:V.15, G:F.18, G:F.18, G:V.19, G:F.20, G:L.24, G:I.26, G:I.27, G:I.27 Hydrogen bonds: K:R.30, K:A.56, G:R.11, E:D.9 Salt bridges: K:R.30, E:R.12 CDL.40: 29 residues within 4Å: Chain 7: F.8, R.11, R.12, A.13, L.16, L.17 Chain 8: F.21 Chain L: L.17, I.18, F.35, M.38, I.92, G.96, V.99, A.102, L.103, V.106, R.110, F.116, P.119, S.123, I.126, V.130, V.134 Chain X: R.11, V.15 Ligands: U10.37, BCL.75, CRT.104 20 PLIP interactions: 12 interactions with chain L, 6 interactions with chain 7, 1 interactions with chain X, 1 interactions with chain 8 Hydrophobic interactions: L:I.18, L:F.35, L:I.92, L:V.99, L:A.102, L:L.103, L:P.119, L:I.126, L:V.130, L:V.134, 7:F.8, 7:A.13, 7:L.16, 7:L.17, X:V.15, 8:F.21 Salt bridges: L:R.110, L:R.110, 7:R.11, 7:R.12 CDL.48: 30 residues within 4Å: Chain I: R.12, F.20, G.23, I.27 Chain K: V.16, I.19, F.20, G.23, L.24, Y.27 Chain L: N.200, P.201 Chain M: W.130, R.138, G.143, T.144, H.145, W.148, A.151, L.155, R.267, W.270, W.271 Chain T: F.22, I.26 Ligands: CDL.15, BCL.24, 6PL.41, CDL.49, 6PL.66 23 PLIP interactions: 11 interactions with chain M, 2 interactions with chain I, 7 interactions with chain K, 2 interactions with chain T, 1 interactions with chain L Hydrophobic interactions: M:W.130, M:W.148, M:W.148, M:L.155, M:W.271, I:F.20, K:V.16, K:I.19, K:F.20, K:L.24, K:Y.27, K:Y.27, T:F.22, T:I.26 Hydrogen bonds: M:T.144, M:T.144, M:R.267, K:Y.27, L:P.201 Salt bridges: M:R.138, M:H.145, M:R.267, I:R.12 CDL.49: 20 residues within 4Å: Chain M: W.130, Y.134, R.135, R.138, W.148, L.158, F.162 Chain N: R.11, V.15 Chain T: W.5, F.8, R.12, A.13, L.16 Ligands: CDL.48, U10.50, BCL.51, LMT.52, LMT.64, BCL.65 17 PLIP interactions: 10 interactions with chain M, 6 interactions with chain T, 1 interactions with chain N Hydrophobic interactions: M:W.130, M:W.130, M:Y.134, M:W.148, M:W.148, M:L.158, M:F.162, T:W.5, T:F.8, T:A.13, T:L.16, T:L.16 Hydrogen bonds: M:R.135 Salt bridges: M:R.135, M:R.138, T:R.12, N:R.11

12 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.8: 11 residues within 4Å: Chain B: L.46, P.47, K.48 Chain D: A.35, L.38, M.41, W.42, R.43 Ligands: BCL.2, 6PL.4, BCL.5 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:L.46, B:L.46, D:A.35, D:L.38 Hydrogen bonds: B:P.47, D:R.43 LMT.20: 11 residues within 4Å: Chain E: I.27, S.34 Chain G: I.26, F.30, N.39, D.42 Ligands: CDL.11, CDL.15, 6PL.29, LMT.30, 6PL.35 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain E Hydrophobic interactions: G:I.26, G:F.30, E:I.27 Hydrogen bonds: G:N.39, G:D.42 LMT.26: 9 residues within 4Å: Chain H: L.46 Chain J: A.35, L.38, A.39, M.41, W.42 Ligands: BCL.21, 6PL.23, BCL.24 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain H Hydrophobic interactions: J:A.35, J:L.38, J:A.39, H:L.46 LMT.30: 14 residues within 4Å: Chain G: I.27, F.30, L.33, S.34 Chain K: Y.6, L.7, Q.11, V.12, Y.15, V.16 Chain M: K.300 Ligands: CDL.15, LMT.20, 6PL.29 8 PLIP interactions: 6 interactions with chain K, 2 interactions with chain G Hydrophobic interactions: K:Y.6, K:L.7, K:V.12, K:Y.15, K:Y.15, K:V.16, G:I.27, G:F.30 LMT.36: 5 residues within 4Å: Chain L: I.251, V.255, L.256, A.257, W.265 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:I.251 Hydrogen bonds: L:V.255, L:A.257 LMT.52: 10 residues within 4Å: Chain M: L.104 Chain N: F.30, L.33, S.34, T.35, N.39, R.45 Chain T: I.31 Ligands: CDL.49, LMT.64 5 PLIP interactions: 4 interactions with chain N, 1 interactions with chain T Hydrophobic interactions: N:F.30, T:I.31 Hydrogen bonds: N:T.35, N:N.39, N:R.45 LMT.64: 7 residues within 4Å: Chain M: L.166, L.167 Chain T: I.31, S.34 Ligands: CDL.49, LMT.52, 6PL.66 2 PLIP interactions: 2 interactions with chain T Hydrophobic interactions: T:I.31 Hydrogen bonds: T:S.34 LMT.72: 8 residues within 4Å: Chain S: L.46 Chain W: A.35, L.38, A.39, M.41, W.42 Ligands: BCL.61, BCL.70 4 PLIP interactions: 1 interactions with chain S, 3 interactions with chain W Hydrophobic interactions: S:L.46, W:A.35, W:L.38, W:W.42 LMT.76: 8 residues within 4Å: Chain B: A.35, L.38, W.42 Chain Y: L.46, K.48 Ligands: BCL.1, BCL.77, 6PL.79 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain Y Hydrophobic interactions: B:A.35, B:L.38, Y:L.46 LMT.82: 8 residues within 4Å: Chain 0: A.35, L.38, M.41, W.42 Chain W: L.46, K.48 Ligands: BCL.71, BCL.80 2 PLIP interactions: 1 interactions with chain W, 1 interactions with chain 0 Hydrophobic interactions: W:L.46, 0:W.42 LMT.86: 8 residues within 4Å: Chain 0: L.46, K.48 Chain 2: A.35, L.38, M.41, W.42 Ligands: BCL.81, BCL.85 7 PLIP interactions: 3 interactions with chain 2, 4 interactions with chain 0 Hydrophobic interactions: 2:A.35, 2:L.38, 2:W.42, 0:L.46 Hydrogen bonds: 0:K.48, 0:K.48 Salt bridges: 0:K.48 LMT.93: 14 residues within 4Å: Chain 2: L.46, P.47, K.48, A.49 Chain 4: A.35, L.38, M.41, W.42, R.43, P.44 Ligands: BCL.87, 6PL.89, BCL.90, 6PL.94 7 PLIP interactions: 3 interactions with chain 2, 4 interactions with chain 4 Hydrophobic interactions: 2:L.46, 4:A.35, 4:L.38, 4:W.42 Hydrogen bonds: 2:P.47, 2:A.49, 4:W.42

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.32: 27 residues within 4Å: Chain L: T.39, F.42, A.43, A.94, F.98, W.101, E.105, V.118, A.121, F.122, A.125, F.147, Y.149, G.150, I.151, H.154, V.242 Chain M: Y.210, A.213, L.214, M.218, W.252, M.256 Ligands: 6PL.6, BCL.31, BCL.42, U10.46 14 PLIP interactions: 11 interactions with chain L, 3 interactions with chain M Hydrophobic interactions: L:A.43, L:A.94, L:A.121, L:F.122, L:F.122, L:A.125, L:F.147, L:Y.149, L:Y.149, L:V.242, M:Y.210, M:A.213, M:L.214 pi-Stacking: L:F.122 BPH.45: 23 residues within 4Å: Chain L: F.182, C.185, L.186, A.189, L.190, L.220, V.221 Chain M: V.51, S.60, L.61, G.64, I.68, S.125, W.129, V.146, A.149, F.150, A.153, A.273, P.277 Ligands: BCL.38, U10.39, BCL.44 14 PLIP interactions: 3 interactions with chain L, 11 interactions with chain M Hydrophobic interactions: L:F.182, L:A.189, L:L.190, M:V.51, M:L.61, M:L.61, M:I.68, M:W.129, M:W.129, M:A.149, M:F.150, M:F.150, M:P.277 pi-Stacking: M:F.150

5 x U10: UBIQUINONE-10(Non-covalent)

U10.33: 21 residues within 4Å: Chain L: F.124, F.180, T.183, A.187, L.190, H.191, L.194, E.213, N.214, F.217, Y.223, S.224, I.225, G.226, I.230, L.233, S.240, F.243, F.244 Ligands: BCL.38, U10.39 14 PLIP interactions: 14 interactions with chain L Hydrophobic interactions: L:F.124, L:F.180, L:F.180, L:A.187, L:L.190, L:F.217, L:I.225, L:I.230, L:L.233, L:F.243, L:F.244 Hydrogen bonds: L:H.191, L:I.225, L:G.226 U10.37: 20 residues within 4Å: Chain 7: V.19, F.20, G.23, I.26, I.27, F.30, I.31 Chain L: F.78, W.87, Q.88, S.91, I.92, T.95, V.133, V.134, W.143 Chain X: F.22 Ligands: CDL.40, PGT.101, BCL.102 14 PLIP interactions: 8 interactions with chain 7, 5 interactions with chain L, 1 interactions with chain X Hydrophobic interactions: 7:V.19, 7:V.19, 7:F.20, 7:I.26, 7:I.27, 7:I.27, 7:F.30, 7:I.31, L:F.78, L:V.134, L:W.143, X:F.22 Hydrogen bonds: L:Q.88, L:S.91 U10.39: 14 residues within 4Å: Chain L: M.175, T.179, W.266, W.268, W.269 Chain M: L.87, F.90, C.91, V.179 Ligands: U10.33, BCL.38, BCL.44, BPH.45, QAK.47 6 PLIP interactions: 4 interactions with chain M, 2 interactions with chain L Hydrophobic interactions: M:L.87, M:F.90, M:F.90, M:V.179, L:T.179 pi-Stacking: L:W.269 U10.46: 23 residues within 4Å: Chain L: F.30, V.37, V.40, W.101, R.104 Chain M: M.218, H.219, T.222, L.245, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, I.265, W.268, F.272 Ligands: 6PL.6, CDL.7, BPH.32 17 PLIP interactions: 11 interactions with chain M, 6 interactions with chain L Hydrophobic interactions: M:M.218, M:W.252, M:F.258, M:I.265, M:I.265, M:W.268, M:W.268, M:W.268, M:F.272, L:F.30, L:F.30, L:F.30, L:V.40, L:V.40, L:W.101 Hydrogen bonds: M:T.222, M:A.260 U10.50: 34 residues within 4Å: Chain M: F.55, T.56, L.62, C.63, V.66, E.69, I.70, L.73, W.114, F.120, F.121, V.124, A.127, L.128, V.131, R.135 Chain N: R.12, V.19, G.23, I.27 Chain P: V.19, F.20, F.22, G.23, I.26, I.27 Chain R: F.22, G.23, I.26, F.30 Ligands: CDL.49, BCL.56, CRT.58, BCL.60 24 PLIP interactions: 12 interactions with chain M, 5 interactions with chain P, 4 interactions with chain R, 3 interactions with chain N Hydrophobic interactions: M:F.55, M:T.56, M:L.62, M:L.62, M:E.69, M:F.120, M:F.120, M:F.121, M:V.124, M:A.127, M:L.128, M:V.131, P:V.19, P:F.20, P:F.22, P:I.26, P:I.27, R:F.22, R:F.22, R:F.22, R:I.26, N:R.12, N:V.19, N:I.27

1 x FE: FE (III) ION(Non-covalent)

FE.43: 5 residues within 4Å: Chain L: H.191, H.231 Chain M: H.219, E.234, H.266 5 PLIP interactions: 3 interactions with chain M, 2 interactions with chain L Metal complexes: M:H.219, M:E.234, M:H.266, L:H.191, L:H.231

1 x QAK: (6~{R},10~{S},14~{R},19~{R},23~{S},24~{E},27~{S},28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol(Non-covalent)

QAK.47: 23 residues within 4Å: Chain M: I.68, E.69, I.71, G.72, M.75, L.76, F.90, L.116, G.119, F.120, T.123, Y.157, G.161, F.162, P.175, P.176, F.177, G.178, V.179, H.182 Ligands: BCL.38, U10.39, BCL.44 13 PLIP interactions: 13 interactions with chain M Hydrophobic interactions: M:I.71, M:L.76, M:F.90, M:L.116, M:T.123, M:Y.157, M:Y.157, M:Y.157, M:F.162, M:P.175, M:F.177, M:F.177, M:V.179

2 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.97: 13 residues within 4Å: Chain 5: V.19, G.23, F.30, I.31, S.34, T.35, S.36, R.45 Chain 7: D.42 Chain L: L.139, I.250, P.254 Ligands: PGT.101 11 PLIP interactions: 7 interactions with chain 5, 2 interactions with chain L, 2 interactions with chain 7 Hydrophobic interactions: 5:V.19, 5:F.30, 5:I.31, L:L.139, L:I.250 Hydrogen bonds: 5:S.34, 5:S.34, 5:S.36, 5:R.45, 7:D.42, 7:D.42 PGT.101: 14 residues within 4Å: Chain 5: F.20, L.24, I.27, I.31 Chain 7: I.26, F.30, L.33, S.34 Chain L: L.76, F.127 Ligands: U10.37, PGT.97, CRT.99, BCL.102 8 PLIP interactions: 5 interactions with chain 5, 1 interactions with chain 7, 2 interactions with chain L Hydrophobic interactions: 5:F.20, 5:F.20, 5:L.24, 5:I.27, 5:I.31, 7:I.26, L:F.127, L:F.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swainsbury, D.J.K. et al., Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels. Sci Adv (2021)

Release Date

2021-01-13

Peptides

Light-harvesting complex 1 alpha chain: ACEGINPRTVXZ1357
Light-harvesting complex 1 beta chain: BDFHJOQSUWY02468
H subunit of photosynthetic reaction center complex: K
Reaction center protein L chain: L
Reaction center protein M chain: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
E

E
G

G
J

I
N

N
R

P
T

R
V

T
P

V
Y

X
A

Z
1

1
3

3
5

5
7

7
9

B
D

D
F

F
I

H
K

J
O

O
S

Q
U

S
X

U
Q

W
Z

Y
B

0
2

2
4

4
6

6
8

8
0

K
H

L
L

M
M

Membrane

We predict this structure to be a membrane protein.
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Light-harvesting complex 1 alpha chain

Light-harvesting complex 1 beta chain

H subunit of photosynthetic reaction center complex

Reaction center protein L chain

Reaction center protein M chain

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