SMTL ID : 6z5s.1

RC-LH1(14)-W complex from Rhodopseudomonas palustris

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-14-14-mer

Ligands

1 x QAK: (6~{R},10~{S},14~{R},19~{R},23~{S},24~{E},27~{S},28~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol(Non-covalent)

QAK.1: 27 residues within 4Å: Chain B: I.68, E.69, I.71, G.72, L.73, M.75, L.76, F.90, W.115, G.119, F.120, T.123, Y.157, G.161, F.162, W.171, P.175, P.176, F.177, G.178, V.179, H.182 Chain U: F.30, I.31 Ligands: BCL.2, BCL.10, U10.19 18 PLIP interactions: 2 interactions with chain U, 16 interactions with chain B Hydrophobic interactions: U:F.30, U:I.31, B:I.68, B:I.71, B:L.76, B:F.90, B:W.115, B:F.120, B:Y.157, B:Y.157, B:F.162, B:W.171, B:P.175, B:F.177, B:F.177, B:F.177, B:V.179 Hydrogen bonds: B:E.69

32 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.2: 28 residues within 4Å: Chain B: L.122, I.126, A.153, I.154, L.156, L.160, T.186, N.187, F.189, S.190, L.196, Y.197, H.202, S.205, I.206, L.209, Y.210, C.276, G.280, I.284 Chain C: V.158, H.169, F.182 Ligands: QAK.1, BPH.3, BCL.7, BCL.10, BCL.11 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:L.122, B:L.122, B:I.126, B:I.126, B:L.156, B:T.186, B:F.189, B:L.196, B:Y.197, B:Y.197, B:I.206, B:L.209, B:Y.210 Metal complexes: B:H.202 BCL.7: 22 residues within 4Å: Chain B: Y.197, C.203, I.206, A.207, Y.210, G.211, L.214 Chain C: I.47, Y.129, L.132, F.147, I.151, F.152, H.154, L.155 Ligands: BCL.2, U10.4, BCL.11, BPH.12, CDL.13, 6PL.16, CDL.17 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain C, Hydrophobic interactions: B:Y.197, B:I.206, B:I.206, B:Y.210, B:L.214, C:I.47, C:Y.129, C:L.132, C:F.147, C:L.155 pi-Stacking: B:Y.210 BCL.10: 20 residues within 4Å: Chain B: L.61, W.129, Y.157, L.160, V.179, H.182, L.183, T.186 Chain C: H.169, M.175, I.178, T.179, F.182, T.183, L.186, V.221 Ligands: QAK.1, BCL.2, BPH.3, BCL.11 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain C, Hydrophobic interactions: B:L.61, B:L.160, B:L.183, C:I.178, C:I.178, C:T.183, C:L.186, C:V.221 Metal complexes: B:H.182 BCL.11: 29 residues within 4Å: Chain B: Y.197, Y.210 Chain C: F.98, F.122, A.125, I.126, A.128, Y.129, L.132, W.157, V.158, T.161, G.162, F.168, H.169, H.174, A.177, I.178, F.181, F.182, S.245, A.246, M.249 Ligands: BCL.2, U10.4, BCL.7, BCL.10, BPH.12, CDL.17 17 PLIP interactions: 16 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:F.98, C:F.98, C:F.122, C:A.128, C:V.158, C:T.161, C:F.168, C:F.168, C:A.177, C:I.178, C:I.178, C:F.181, C:F.181, C:F.182, B:Y.210 Hydrogen bonds: C:S.245 Metal complexes: C:H.174 BCL.18: 23 residues within 4Å: Chain E: V.15, F.18, L.21, F.22, A.25, H.29, W.40 Chain F: F.28, V.31, A.32, A.35, H.36, W.42 Chain K: F.8, A.13, L.17, F.20, I.28 Chain L: L.46 Ligands: BCL.20, LMT.22, BCL.33, CRT.34 25 PLIP interactions: 3 interactions with chain F, 9 interactions with chain K, 12 interactions with chain E, 1 interactions with chain L, Hydrophobic interactions: F:F.28, F:A.35, F:W.42, K:F.8, K:F.8, K:A.13, K:L.17, K:F.20, K:F.20, K:F.20, K:I.28, K:I.28, E:V.15, E:F.18, E:F.18, E:L.21, E:L.21, E:F.22, E:W.40, E:W.40, E:W.40, E:W.40, L:L.46 pi-Stacking: E:H.29 Metal complexes: E:H.29 BCL.20: 20 residues within 4Å: Chain E: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain F: F.28, I.29, A.32, H.36, W.45 Chain I: W.40, L.41 Chain J: L.38 Ligands: BCL.18, CRT.21, LMT.23, BCL.27, LMT.31 11 PLIP interactions: 1 interactions with chain I, 3 interactions with chain E, 7 interactions with chain F, Hydrophobic interactions: I:L.41, E:I.28, E:I.28, E:F.38, F:I.29, F:A.32, F:W.45, F:W.45, F:W.45, F:W.45 Metal complexes: F:H.36 BCL.24: 19 residues within 4Å: Chain G: F.18, V.19, L.21, F.22, A.25, H.29, L.32, W.40 Chain H: F.28, V.31, A.32, A.35, H.36 Chain I: F.20, I.28 Ligands: BCL.25, LMT.26, CRT.29, BCL.30 16 PLIP interactions: 11 interactions with chain G, 1 interactions with chain H, 4 interactions with chain I, Hydrophobic interactions: G:F.18, G:F.18, G:F.18, G:V.19, G:L.21, G:A.25, G:L.32, G:W.40, G:W.40, G:W.40, H:A.35, I:F.20, I:F.20, I:F.20, I:I.28 Metal complexes: G:H.29 BCL.25: 12 residues within 4Å: Chain G: L.21, L.24, A.25, I.28, H.29, L.32 Chain H: F.28, A.32, H.36, A.39, W.45 Ligands: BCL.24 11 PLIP interactions: 10 interactions with chain H, 1 interactions with chain G, Hydrophobic interactions: H:F.28, H:A.32, H:H.36, H:A.39, H:W.45, H:W.45, H:W.45, G:I.28 pi-Stacking: H:W.45, H:W.45 Metal complexes: H:H.36 BCL.27: 19 residues within 4Å: Chain E: I.28 Chain F: L.46 Chain I: F.18, L.21, F.22, A.25, H.29, L.32, W.40 Chain J: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: BCL.20, CRT.21, BCL.30, LMT.31 12 PLIP interactions: 4 interactions with chain J, 6 interactions with chain I, 1 interactions with chain F, 1 interactions with chain E, Hydrophobic interactions: J:F.28, J:F.28, J:A.35, J:W.42, I:L.32, I:W.40, I:W.40, I:W.40, I:W.40, F:L.46, E:I.28 Metal complexes: I:H.29 BCL.30: 15 residues within 4Å: Chain G: L.41 Chain I: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain J: I.29, A.32, H.36, W.45 Ligands: BCL.24, LMT.26, BCL.27 11 PLIP interactions: 1 interactions with chain G, 8 interactions with chain J, 2 interactions with chain I, Hydrophobic interactions: G:L.41, J:I.29, J:A.32, J:W.45, J:W.45, J:W.45, J:W.45, J:W.45, I:L.32, I:F.38 Metal complexes: J:H.36 BCL.32: 19 residues within 4Å: Chain K: F.18, F.22, A.25, H.29, L.32, W.40 Chain L: F.28, V.31, A.32, A.35, H.36, W.42 Chain M: F.20, I.28 Chain N: L.46 Ligands: BCL.33, BCL.37, LMT.38, CRT.39 20 PLIP interactions: 1 interactions with chain N, 12 interactions with chain K, 2 interactions with chain L, 5 interactions with chain M, Hydrophobic interactions: N:L.46, K:F.18, K:F.18, K:F.22, K:F.22, K:A.25, K:L.32, K:W.40, K:W.40, K:W.40, K:W.40, L:A.35, L:W.42, M:F.20, M:F.20, M:F.20, M:I.28, M:I.28 pi-Stacking: K:H.29 Metal complexes: K:H.29 BCL.33: 19 residues within 4Å: Chain E: W.40, L.41 Chain F: L.38 Chain K: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain L: F.28, A.32, H.36, W.45 Ligands: BCL.18, LMT.22, BCL.32, CRT.34, LMT.35 13 PLIP interactions: 7 interactions with chain L, 3 interactions with chain K, 1 interactions with chain E, 2 interactions with chain F, Hydrophobic interactions: L:F.28, L:A.32, L:W.45, L:W.45, L:W.45, L:W.45, K:I.28, K:I.28, K:F.38, E:L.41, F:L.38, F:L.38 Metal complexes: L:H.36 BCL.36: 24 residues within 4Å: Chain B: L.62 Chain M: V.15, F.18, V.19, L.21, F.22, A.25, H.29, L.32, F.38, W.40 Chain N: F.28, V.31, A.32, A.35, H.36, W.42 Chain O: L.16, F.20, I.28 Chain P: L.46 Ligands: BCL.37, BCL.42, CRT.56 19 PLIP interactions: 5 interactions with chain O, 9 interactions with chain M, 3 interactions with chain N, 1 interactions with chain P, 1 interactions with chain B, Hydrophobic interactions: O:L.16, O:F.20, O:F.20, O:I.28, O:I.28, M:F.18, M:F.18, M:L.32, M:W.40, M:W.40, M:W.40, M:W.40, N:F.28, N:A.35, N:W.42, P:L.46, B:L.62 pi-Stacking: M:H.29 Metal complexes: M:H.29 BCL.37: 20 residues within 4Å: Chain K: W.40, L.41 Chain L: L.38 Chain M: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain N: F.28, I.29, A.32, H.36, W.45 Ligands: BCL.32, BCL.36, LMT.38, CRT.39, LMT.40 12 PLIP interactions: 6 interactions with chain N, 3 interactions with chain M, 1 interactions with chain K, 2 interactions with chain L, Hydrophobic interactions: N:F.28, N:A.32, N:W.45, N:W.45, N:W.45, M:I.28, M:L.32, M:F.38, K:L.41, L:L.38, L:L.38 Metal complexes: N:H.36 BCL.41: 23 residues within 4Å: Chain B: F.55, L.128 Chain O: F.18, L.21, F.22, A.25, H.29, L.32, W.40 Chain P: F.28, V.31, A.32, A.35, H.36, W.42 Chain U: L.16, V.19, F.20, I.28 Chain V: L.46 Ligands: BCL.42, BCL.59, CRT.62 17 PLIP interactions: 6 interactions with chain U, 7 interactions with chain O, 1 interactions with chain V, 2 interactions with chain P, 1 interactions with chain B, Hydrophobic interactions: U:L.16, U:V.19, U:F.20, U:F.20, U:I.28, U:I.28, O:F.18, O:L.32, O:W.40, O:W.40, O:W.40, O:W.40, V:L.46, P:A.35, P:W.42, B:F.55 Metal complexes: O:H.29 BCL.42: 22 residues within 4Å: Chain M: W.40, L.41 Chain N: A.35, L.38, A.39 Chain O: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain P: F.25, F.28, I.29, A.32, H.36, W.45 Ligands: BCL.36, BCL.41, LMT.43, CRT.56 14 PLIP interactions: 2 interactions with chain O, 9 interactions with chain P, 1 interactions with chain M, 2 interactions with chain N, Hydrophobic interactions: O:I.28, O:F.38, P:F.25, P:F.28, P:I.29, P:A.32, P:W.45, P:W.45, P:W.45, P:W.45, M:L.41, N:A.35, N:L.38 Metal complexes: P:H.36 BCL.45: 27 residues within 4Å: Chain A: A.38, M.41, V.42, P.45, F.46, A.75, A.78, F.79, L.82 Chain Q: F.18, V.19, L.21, F.22, A.25, H.29, L.32, W.40 Chain R: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: LMT.14, BCL.46, LMT.47, BCL.50 18 PLIP interactions: 2 interactions with chain R, 11 interactions with chain Q, 5 interactions with chain A, Hydrophobic interactions: R:A.35, R:W.42, Q:F.18, Q:V.19, Q:F.22, Q:F.22, Q:A.25, Q:L.32, Q:W.40, Q:W.40, Q:W.40, Q:W.40, A:P.45, A:P.45, A:F.46, A:F.79, A:L.82 Metal complexes: Q:H.29 BCL.46: 23 residues within 4Å: Chain Q: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain R: F.28, I.29, A.32, H.36, A.39, W.45, L.46 Chain S: L.41 Chain T: V.31, A.35, L.38, W.42 Ligands: BCL.45, LMT.48, BCL.50, LMT.53 12 PLIP interactions: 7 interactions with chain R, 2 interactions with chain Q, 1 interactions with chain S, 2 interactions with chain T, Hydrophobic interactions: R:F.28, R:A.32, R:A.39, R:W.45, R:W.45, R:L.46, Q:I.28, Q:F.38, S:L.41, T:V.31, T:W.42 Metal complexes: R:H.36 BCL.50: 22 residues within 4Å: Chain C: F.41 Chain Q: F.20, I.28 Chain R: L.46 Chain S: F.18, V.19, L.21, F.22, A.25, H.29, L.32, W.40 Chain T: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: BCL.45, BCL.46, CRT.49, BCL.54 18 PLIP interactions: 11 interactions with chain S, 2 interactions with chain T, 3 interactions with chain Q, 1 interactions with chain C, 1 interactions with chain R, Hydrophobic interactions: S:F.18, S:F.18, S:V.19, S:L.21, S:F.22, S:L.32, S:W.40, S:W.40, S:W.40, S:W.40, T:A.35, T:W.42, Q:F.20, Q:I.28, Q:I.28, C:F.41, R:L.46 Metal complexes: S:H.29 BCL.54: 23 residues within 4Å: Chain 4: W.40, L.41 Chain 5: V.31, A.35, L.38, A.39 Chain S: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain T: F.28, I.29, A.32, H.36, W.45, L.46 Ligands: BCL.50, LMT.52, CRT.55, BCL.87 18 PLIP interactions: 3 interactions with chain S, 10 interactions with chain T, 1 interactions with chain 4, 4 interactions with chain 5, Hydrophobic interactions: S:I.28, S:L.32, S:F.38, T:F.28, T:I.29, T:A.32, T:W.45, T:W.45, T:W.45, T:W.45, T:W.45, T:L.46, 4:L.41, 5:V.31, 5:A.35, 5:L.38, 5:A.39 Metal complexes: T:H.36 BCL.58: 24 residues within 4Å: Chain U: F.18, L.21, F.22, A.25, H.29, L.32, W.40 Chain V: F.28, V.31, A.32, A.35, H.36, W.42 Chain W: V.19, F.20, G.23, I.28 Chain X: L.46 Ligands: LMT.57, BCL.59, BCL.63, PGT.64, BCL.65, CRT.68 15 PLIP interactions: 3 interactions with chain W, 1 interactions with chain X, 9 interactions with chain U, 2 interactions with chain V, Hydrophobic interactions: W:F.20, W:I.28, W:I.28, X:L.46, U:F.18, U:F.22, U:L.32, U:W.40, U:W.40, U:W.40, U:W.40, V:A.35, V:W.42 pi-Stacking: U:H.29 Metal complexes: U:H.29 BCL.59: 22 residues within 4Å: Chain O: W.40, L.41 Chain P: A.35, L.38, A.39 Chain U: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain V: F.28, I.29, A.32, H.36, W.45, L.46 Ligands: BCL.41, BCL.58, LMT.61, CRT.62 14 PLIP interactions: 3 interactions with chain U, 8 interactions with chain V, 1 interactions with chain O, 2 interactions with chain P, Hydrophobic interactions: U:I.28, U:I.28, U:F.38, V:F.28, V:I.29, V:A.32, V:W.45, V:W.45, V:W.45, V:L.46, O:L.41, P:A.35, P:L.38 Metal complexes: V:H.36 BCL.63: 21 residues within 4Å: Chain W: F.18, V.19, F.22, A.25, H.29, W.40 Chain X: F.28, V.31, A.32, A.35, H.36, W.42 Chain Y: F.20, I.28 Chain Z: L.46 Ligands: CDL.6, BCL.58, PGT.64, BCL.65, BCL.70, CRT.72 17 PLIP interactions: 2 interactions with chain X, 11 interactions with chain W, 3 interactions with chain Y, 1 interactions with chain Z, Hydrophobic interactions: X:A.35, X:W.42, W:F.18, W:F.18, W:V.19, W:F.22, W:F.22, W:W.40, W:W.40, W:W.40, W:W.40, Y:F.20, Y:I.28, Y:I.28, Z:L.46 pi-Stacking: W:H.29 Metal complexes: W:H.29 BCL.65: 23 residues within 4Å: Chain U: W.40, L.41 Chain V: V.31, A.35, L.38, A.39 Chain W: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain X: F.28, I.29, A.32, H.36, W.45, L.46 Ligands: BCL.58, BCL.63, LMT.67, CRT.68 18 PLIP interactions: 1 interactions with chain U, 11 interactions with chain X, 4 interactions with chain V, 2 interactions with chain W, Hydrophobic interactions: U:L.41, X:F.28, X:I.29, X:A.32, X:W.45, X:W.45, X:W.45, X:W.45, X:W.45, X:L.46, X:L.46, V:V.31, V:A.35, V:L.38, V:A.39, W:I.28, W:F.38 Metal complexes: X:H.36 BCL.69: 24 residues within 4Å: Chain 0: F.20, I.28 Chain 1: L.46 Chain Y: F.18, V.19, L.21, F.22, A.25, H.29, L.32, W.40 Chain Z: F.28, V.31, A.32, A.35, H.36, W.42 Ligands: 6PL.5, CDL.6, BCL.70, LMT.73, BCL.75, CRT.78, CDL.79 20 PLIP interactions: 12 interactions with chain Y, 2 interactions with chain Z, 5 interactions with chain 0, 1 interactions with chain 1, Hydrophobic interactions: Y:F.18, Y:V.19, Y:L.21, Y:L.21, Y:F.22, Y:F.22, Y:L.32, Y:W.40, Y:W.40, Y:W.40, Y:W.40, Z:A.35, Z:W.42, 0:F.20, 0:F.20, 0:F.20, 0:I.28, 0:I.28, 1:L.46 Metal complexes: Y:H.29 BCL.70: 21 residues within 4Å: Chain W: L.41 Chain X: A.35, L.38, A.39 Chain Y: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain Z: F.28, I.29, A.32, H.36, W.45, L.46 Ligands: BCL.63, BCL.69, LMT.71, CRT.72 10 PLIP interactions: 7 interactions with chain Z, 2 interactions with chain Y, 1 interactions with chain W, Hydrophobic interactions: Z:A.32, Z:W.45, Z:W.45, Z:W.45, Z:L.46, Z:L.46, Y:I.28, Y:F.38, W:L.41 Metal complexes: Z:H.36 BCL.74: 22 residues within 4Å: Chain 0: F.18, V.19, L.21, F.22, A.25, H.29, L.32, W.40 Chain 1: F.28, V.31, A.32, A.35, H.36, W.42 Chain 2: F.20, I.28 Chain 3: L.46 Ligands: BCL.75, CDL.79, BCL.81, CDL.82, CRT.85 20 PLIP interactions: 4 interactions with chain 2, 13 interactions with chain 0, 1 interactions with chain 3, 2 interactions with chain 1, Hydrophobic interactions: 2:F.20, 2:F.20, 2:I.28, 2:I.28, 0:F.18, 0:V.19, 0:L.21, 0:L.21, 0:F.22, 0:A.25, 0:L.32, 0:W.40, 0:W.40, 0:W.40, 0:W.40, 3:L.46, 1:A.35, 1:W.42 pi-Stacking: 0:H.29 Metal complexes: 0:H.29 BCL.75: 22 residues within 4Å: Chain 0: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain 1: F.28, I.29, A.32, H.36, W.45, L.46 Chain Y: W.40, L.41 Chain Z: A.35, L.38, A.39 Ligands: BCL.69, BCL.74, LMT.76, CRT.78 15 PLIP interactions: 2 interactions with chain Z, 9 interactions with chain 1, 3 interactions with chain 0, 1 interactions with chain Y, Hydrophobic interactions: Z:L.38, Z:A.39, 1:F.28, 1:A.32, 1:W.45, 1:W.45, 1:W.45, 1:W.45, 1:W.45, 1:L.46, 0:I.28, 0:I.28, 0:F.38, Y:L.41 Metal complexes: 1:H.36 BCL.80: 21 residues within 4Å: Chain 2: F.18, F.22, A.25, H.29, L.32, W.40 Chain 3: F.28, V.31, A.32, A.35, H.36, W.42 Chain 4: V.19, F.20, G.23, L.24, I.28 Chain 5: L.46 Ligands: BCL.81, BCL.88, CRT.91 13 PLIP interactions: 2 interactions with chain 3, 8 interactions with chain 2, 2 interactions with chain 4, 1 interactions with chain 5, Hydrophobic interactions: 3:A.35, 3:W.42, 2:F.18, 2:F.22, 2:L.32, 2:W.40, 2:W.40, 2:W.40, 2:W.40, 4:I.28, 4:I.28, 5:L.46 pi-Stacking: 2:H.29 BCL.81: 24 residues within 4Å: Chain 0: W.40, L.41 Chain 1: V.31, A.35, L.38, A.39 Chain 2: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain 3: F.28, I.29, A.32, H.36, A.39, W.45, L.46 Ligands: BCL.74, BCL.80, LMT.83, CRT.85 15 PLIP interactions: 10 interactions with chain 3, 1 interactions with chain 0, 3 interactions with chain 2, 1 interactions with chain 1, Hydrophobic interactions: 3:F.28, 3:I.29, 3:A.32, 3:A.39, 3:W.45, 3:W.45, 3:W.45, 3:W.45, 3:L.46, 0:L.41, 2:I.28, 2:L.32, 2:F.38, 1:V.31 Metal complexes: 3:H.36 BCL.87: 24 residues within 4Å: Chain 4: F.18, V.19, L.21, F.22, G.23, A.25, H.29, L.32, W.40 Chain 5: F.28, V.31, A.32, A.35, H.36, W.42 Chain S: F.20, I.28 Chain T: L.46 Ligands: CDL.13, CDL.17, BCL.54, CRT.55, 6PL.86, BCL.88 20 PLIP interactions: 13 interactions with chain 4, 4 interactions with chain S, 2 interactions with chain 5, 1 interactions with chain T, Hydrophobic interactions: 4:F.18, 4:F.18, 4:L.21, 4:F.22, 4:F.22, 4:L.32, 4:W.40, 4:W.40, 4:W.40, 4:W.40, S:F.20, S:F.20, S:I.28, S:I.28, 5:A.35, 5:W.42, T:L.46 pi-Stacking: 4:H.29, 4:H.29 Metal complexes: 4:H.29 BCL.88: 24 residues within 4Å: Chain 2: W.40, L.41 Chain 3: A.35, L.38, A.39 Chain 4: L.21, L.24, A.25, I.28, H.29, L.32, F.38 Chain 5: F.28, I.29, A.32, H.36, A.39, W.45, L.46 Ligands: BCL.80, CDL.82, BCL.87, LMT.90, CRT.91 13 PLIP interactions: 2 interactions with chain 4, 10 interactions with chain 5, 1 interactions with chain 2, Hydrophobic interactions: 4:I.28, 4:F.38, 5:F.28, 5:I.29, 5:A.32, 5:A.39, 5:W.45, 5:W.45, 5:W.45, 5:W.45, 5:L.46, 2:L.41 Metal complexes: 5:H.36

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.3: 23 residues within 4Å: Chain B: S.60, L.61, G.64, I.68, L.122, S.125, I.126, W.129, T.133, V.146, A.149, F.150, A.153, A.273, P.277 Chain C: F.182, C.185, L.186, A.189, L.190, L.220 Ligands: BCL.2, BCL.10 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:L.61, B:L.122, B:W.129, B:A.149, B:F.150, B:F.150, B:P.277, C:F.182, C:A.189 pi-Stacking: B:F.150 BPH.12: 33 residues within 4Å: Chain B: Y.210, A.213, L.214, A.217, M.218, W.252, T.255, M.256 Chain C: T.39, F.42, A.43, I.50, V.90, C.93, A.94, A.97, F.98, W.101, E.105, V.118, A.121, F.122, A.125, F.147, G.150, I.151, H.154, V.242 Ligands: U10.4, BCL.7, BCL.11, CDL.13, CDL.17 17 PLIP interactions: 13 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:A.43, C:I.50, C:V.90, C:A.97, C:F.98, C:A.121, C:F.122, C:F.122, C:A.125, C:F.147, C:V.242, C:V.242, B:Y.210, B:A.213, B:L.214, B:A.217 pi-Stacking: C:F.122

3 x U10: UBIQUINONE-10(Non-covalent)

U10.4: 32 residues within 4Å: Chain B: L.215, M.218, H.219, T.222, I.223, L.245, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, I.265, W.268, F.272 Chain C: F.30, Y.31, V.32, G.36, V.37, V.40, W.101, R.104 Chain S: L.16 Ligands: BCL.7, BCL.11, BPH.12, 6PL.16, CDL.17, 6PL.86 21 PLIP interactions: 12 interactions with chain B, 8 interactions with chain C, 1 interactions with chain S Hydrophobic interactions: B:L.215, B:M.218, B:W.252, B:M.256, B:F.258, B:A.260, B:I.265, B:I.265, B:W.268, B:W.268, B:F.272, C:F.30, C:F.30, C:V.32, C:V.37, C:V.40, C:V.40, C:W.101, C:W.101, S:L.16 Hydrogen bonds: B:A.260 U10.15: 9 residues within 4Å: Chain C: F.78, W.87, Q.88, S.91, I.92, T.95, V.133, V.134, W.143 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.78, C:F.78, C:W.143 Hydrogen bonds: C:Q.88, C:S.91 U10.19: 12 residues within 4Å: Chain B: F.86, L.87, F.90, C.91 Chain C: W.266, W.268, W.269 Chain E: F.22 Chain K: V.19, G.23, I.27 Ligands: QAK.1 8 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B, 2 interactions with chain K, 1 interactions with chain E pi-Stacking: C:W.269 Hydrophobic interactions: B:L.87, B:F.90, B:F.90, B:F.90, K:V.19, K:I.27, E:F.22

3 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

6PL.5: 20 residues within 4Å: Chain B: I.282, I.285, L.286, G.288, P.289, V.290, D.292 Chain D: L.9, V.12, T.13, V.16, F.20 Chain Y: G.23, I.27, F.30, I.31, S.34 Ligands: CDL.6, PGT.64, BCL.69 11 PLIP interactions: 3 interactions with chain D, 5 interactions with chain B, 3 interactions with chain Y Hydrophobic interactions: D:V.12, D:V.16, D:F.20, B:I.282, B:I.285, B:L.286, B:V.290, Y:I.27, Y:F.30, Y:I.31 Salt bridges: B:D.292 6PL.16: 17 residues within 4Å: Chain B: P.200, W.297, H.301 Chain C: W.63 Chain D: Y.6, Q.11, L.14, Y.15, W.18, F.21, L.25 Ligands: U10.4, BCL.7, CDL.13, CDL.17, LMT.73, CDL.82 11 PLIP interactions: 2 interactions with chain B, 8 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: B:P.200, D:W.18, D:W.18, D:W.18, D:F.21, D:F.21, D:L.25, C:W.63 Salt bridges: B:H.301 Hydrogen bonds: D:Q.11, D:Y.15 6PL.86: 19 residues within 4Å: Chain 4: R.11, R.12, V.15, V.19 Chain C: F.25, W.26, V.27, G.28, L.44 Chain D: W.91, P.92 Chain S: F.8, R.12, L.16, F.20 Ligands: U10.4, CDL.13, CDL.17, BCL.87 8 PLIP interactions: 2 interactions with chain C, 4 interactions with chain 4, 2 interactions with chain S Hydrophobic interactions: C:L.44, 4:V.19, 4:V.19, S:F.8, S:F.20 Hydrogen bonds: C:G.28 Salt bridges: 4:R.11, 4:R.12

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.6: 31 residues within 4Å: Chain B: W.130, G.143, T.144, H.145, W.148, A.151, S.152, I.154, L.155, R.267, W.270, W.271, L.278 Chain C: N.200, P.201 Chain D: I.19, F.20, G.23, Y.27 Chain W: V.19, F.22 Chain Y: V.19, F.20, G.23, L.24, I.27 Ligands: 6PL.5, BCL.63, PGT.64, BCL.69, CDL.79 26 PLIP interactions: 13 interactions with chain B, 2 interactions with chain W, 4 interactions with chain Y, 1 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: B:W.130, B:W.148, B:W.148, B:I.154, B:L.155, B:W.270, B:W.271, B:L.278, W:V.19, W:F.22, Y:V.19, Y:F.20, Y:L.24, Y:I.27, D:I.19, D:F.20, D:F.20, D:Y.27, D:Y.27 Hydrogen bonds: B:T.144, C:P.201 Salt bridges: B:H.145, B:H.145, B:H.145, B:R.267 Water bridges: D:Y.27 CDL.13: 34 residues within 4Å: Chain 2: I.27, F.30, I.31, L.33, S.34, N.39 Chain 4: F.22, I.26, I.27, F.30, I.31 Chain C: L.44, I.47, A.48, I.50, A.51, T.59, W.60, N.61, L.62, W.63, I.65, Y.149, G.150 Chain S: F.20, G.23, I.27 Ligands: BCL.7, BPH.12, 6PL.16, CDL.79, CDL.82, 6PL.86, BCL.87 23 PLIP interactions: 12 interactions with chain C, 4 interactions with chain 4, 2 interactions with chain S, 5 interactions with chain 2 Hydrophobic interactions: C:L.44, C:A.48, C:A.51, C:W.60, C:W.60, C:W.60, C:L.62, C:I.65, 4:F.22, 4:I.27, 4:F.30, 4:I.31, S:F.20, S:I.27, 2:F.30, 2:F.30, 2:I.31 Hydrogen bonds: C:T.59, C:W.60, C:N.61, C:L.62, 2:S.34, 2:N.39 CDL.17: 32 residues within 4Å: Chain 4: R.12, V.15, L.16, V.19 Chain B: R.253, M.256, G.257, F.258 Chain C: A.2, V.27, G.28, P.29, F.30, V.40, A.43, I.47, W.63 Chain D: R.29, K.33, Y.37, L.39, K.51, I.52, G.53 Ligands: U10.4, BCL.7, BCL.11, BPH.12, 6PL.16, CDL.82, 6PL.86, BCL.87 20 PLIP interactions: 2 interactions with chain B, 8 interactions with chain C, 5 interactions with chain D, 5 interactions with chain 4 Hydrophobic interactions: B:F.258, C:V.27, C:F.30, C:V.40, C:A.43, C:I.47, C:W.63, 4:L.16, 4:V.19, 4:V.19 Salt bridges: B:R.253, D:R.29, D:K.33, D:K.51, 4:R.12, 4:R.12 Hydrogen bonds: C:A.2, C:A.2, D:Y.37, D:I.52 CDL.28: 15 residues within 4Å: Chain C: P.172, I.176, V.255, L.256, W.265, W.268, N.271, L.272 Chain G: G.23, I.27, F.30, I.31, S.34 Chain I: I.27, S.34 15 PLIP interactions: 3 interactions with chain G, 11 interactions with chain C, 1 interactions with chain I Hydrophobic interactions: G:I.27, G:F.30, C:P.172, C:I.176, C:V.255, C:W.265, C:W.268, C:W.268, C:W.268, C:W.268, C:W.268, C:L.272, C:L.272, I:I.27 Hydrogen bonds: G:S.34 CDL.79: 34 residues within 4Å: Chain 0: R.11, R.12, V.15, L.16, F.18, V.19, F.20, G.23, L.24, I.26, I.27, F.30 Chain 2: F.8, D.9, R.12, A.13, L.16 Chain D: Y.15, I.19, A.22, G.23, F.26, Y.27, R.30, I.52, V.54, A.56 Chain Y: F.22 Ligands: CDL.6, CDL.13, BCL.69, LMT.73, BCL.74, CDL.82 27 PLIP interactions: 13 interactions with chain D, 10 interactions with chain 0, 3 interactions with chain 2, 1 interactions with chain Y Hydrophobic interactions: D:Y.15, D:Y.15, D:I.19, D:I.19, D:A.22, D:F.26, D:F.26, D:Y.27, D:V.54, 0:V.15, 0:F.18, 0:F.18, 0:V.19, 0:F.20, 0:L.24, 0:I.26, 0:I.27, 0:F.30, 2:L.16, Y:F.22 Hydrogen bonds: D:A.56, D:A.56, 0:R.11, 2:D.9 Salt bridges: D:R.30, D:R.30, 2:R.12 CDL.82: 26 residues within 4Å: Chain 2: R.11, R.12, V.15, L.16, V.19, F.20, G.23, I.26, I.27 Chain 4: W.5, F.8, D.9, R.12, A.13, L.16 Chain 5: F.21 Chain D: K.51, I.52, G.53, V.54 Ligands: CDL.13, 6PL.16, CDL.17, BCL.74, CDL.79, BCL.88 20 PLIP interactions: 7 interactions with chain 2, 7 interactions with chain D, 4 interactions with chain 4, 2 interactions with chain 5 Hydrophobic interactions: 2:V.19, 2:V.19, 2:F.20, 2:I.26, 2:I.27, D:V.54, D:V.54, 4:W.5, 4:A.13, 4:L.16, 5:F.21, 5:F.21 Hydrogen bonds: 2:D.9, D:I.52, D:G.53, D:V.54, 4:D.9 Salt bridges: 2:R.12, D:K.51, D:K.51

1 x FE: FE (III) ION(Non-covalent)

FE.8: 5 residues within 4Å: Chain B: H.219, E.234, H.266 Chain C: H.191, H.231 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Metal complexes: C:H.191, C:H.231, B:H.219, B:E.234, B:H.266

29 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.9: 9 residues within 4Å: Chain B: L.104, I.163, L.166, L.167, M.168, G.169 Chain W: S.34 Ligands: LMT.57, PGT.64 Ligand excluded by PLIP LMT.14: 12 residues within 4Å: Chain A: L.82 Chain C: Y.74, G.75, L.76, G.77, G.141 Chain Q: F.22, I.26, H.29, F.30, L.33 Ligands: BCL.45 Ligand excluded by PLIP LMT.22: 10 residues within 4Å: Chain F: A.35, L.38, A.39, M.41, W.42 Chain L: L.46, K.48 Ligands: BCL.18, BCL.33, LMT.35 Ligand excluded by PLIP LMT.23: 7 residues within 4Å: Chain F: V.33, H.36, W.40, W.45, L.46 Ligands: BCL.20, LMT.31 Ligand excluded by PLIP LMT.26: 7 residues within 4Å: Chain H: A.35, L.38, M.41, W.42 Chain J: L.46 Ligands: BCL.24, BCL.30 Ligand excluded by PLIP LMT.31: 8 residues within 4Å: Chain F: L.46 Chain J: A.35, L.38, M.41, W.42 Ligands: BCL.20, LMT.23, BCL.27 Ligand excluded by PLIP LMT.35: 7 residues within 4Å: Chain L: V.33, H.36, W.40, W.45, L.46 Ligands: LMT.22, BCL.33 Ligand excluded by PLIP LMT.38: 10 residues within 4Å: Chain L: A.35, L.38, A.39, M.41, W.42 Chain N: L.46, K.48 Ligands: BCL.32, BCL.37, LMT.40 Ligand excluded by PLIP LMT.40: 9 residues within 4Å: Chain N: A.32, V.33, H.36, W.40, W.45, L.46, K.48 Ligands: BCL.37, LMT.38 Ligand excluded by PLIP LMT.43: 6 residues within 4Å: Chain P: H.36, W.40, W.45, L.46 Ligands: BCL.42, LMT.44 Ligand excluded by PLIP LMT.44: 7 residues within 4Å: Chain P: V.33, H.36, I.37, W.40, M.41, P.44 Ligands: LMT.43 Ligand excluded by PLIP LMT.47: 10 residues within 4Å: Chain A: P.45, F.46, A.67, L.71, A.78 Chain R: A.35, L.38, M.41, W.42 Ligands: BCL.45 Ligand excluded by PLIP LMT.48: 7 residues within 4Å: Chain R: H.36, W.40, M.41, W.45, L.46 Ligands: BCL.46, LMT.53 Ligand excluded by PLIP LMT.51: 5 residues within 4Å: Chain T: H.36, W.40, M.41, P.44 Ligands: LMT.52 Ligand excluded by PLIP LMT.52: 7 residues within 4Å: Chain T: A.32, H.36, W.40, W.45, L.46 Ligands: LMT.51, BCL.54 Ligand excluded by PLIP LMT.53: 5 residues within 4Å: Chain T: L.38, M.41, W.42 Ligands: BCL.46, LMT.48 Ligand excluded by PLIP LMT.57: 16 residues within 4Å: Chain B: L.104, T.105, L.166 Chain U: F.22, F.30, L.33, S.34, N.39, R.45 Chain W: F.20, L.24, I.27, I.31 Ligands: LMT.9, BCL.58, CRT.68 Ligand excluded by PLIP LMT.60: 6 residues within 4Å: Chain V: H.36, I.37, W.40, M.41, P.44 Ligands: LMT.61 Ligand excluded by PLIP LMT.61: 6 residues within 4Å: Chain V: V.33, H.36, W.40, W.45 Ligands: BCL.59, LMT.60 Ligand excluded by PLIP LMT.66: 7 residues within 4Å: Chain X: V.33, H.36, I.37, W.40, M.41, P.44 Ligands: LMT.67 Ligand excluded by PLIP LMT.67: 10 residues within 4Å: Chain V: L.38, M.41 Chain X: A.32, H.36, W.40, W.45, L.46, K.48 Ligands: BCL.65, LMT.66 Ligand excluded by PLIP LMT.71: 5 residues within 4Å: Chain Z: H.36, W.40, M.41, P.44 Ligands: BCL.70 Ligand excluded by PLIP LMT.73: 17 residues within 4Å: Chain 0: I.27, F.30, L.33, S.34, T.35, N.39 Chain D: Y.6, L.7, Q.11, Y.15, V.16, I.19 Chain Y: I.26, F.30 Ligands: 6PL.16, BCL.69, CDL.79 Ligand excluded by PLIP LMT.76: 7 residues within 4Å: Chain 1: A.32, V.33, H.36, W.40, K.48 Ligands: BCL.75, LMT.77 Ligand excluded by PLIP LMT.77: 5 residues within 4Å: Chain 1: I.37, W.40, M.41, P.44 Ligands: LMT.76 Ligand excluded by PLIP LMT.83: 8 residues within 4Å: Chain 1: M.41 Chain 3: V.33, H.36, W.40, W.45, L.46 Ligands: BCL.81, LMT.84 Ligand excluded by PLIP LMT.84: 6 residues within 4Å: Chain 3: H.36, I.37, W.40, M.41, P.44 Ligands: LMT.83 Ligand excluded by PLIP LMT.89: 5 residues within 4Å: Chain 5: H.36, W.40, M.41, P.44 Ligands: LMT.90 Ligand excluded by PLIP LMT.90: 8 residues within 4Å: Chain 3: M.41 Chain 5: H.36, W.40, W.45, L.46, K.48 Ligands: BCL.88, LMT.89 Ligand excluded by PLIP

13 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.21: 29 residues within 4Å: Chain E: L.14, L.17, F.18, F.20, L.21, L.24, I.28, I.31 Chain F: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain I: F.22, A.25, I.26, H.29, F.30, L.33, W.40 Chain K: R.3, I.4, L.6, L.7 Chain L: I.6 Ligands: BCL.20, BCL.27 25 PLIP interactions: 11 interactions with chain E, 1 interactions with chain L, 3 interactions with chain I, 6 interactions with chain F, 4 interactions with chain K Hydrophobic interactions: E:L.14, E:L.14, E:L.17, E:L.17, E:F.18, E:F.18, E:F.20, E:L.21, E:L.21, E:L.24, E:L.24, L:I.6, I:F.22, I:A.25, I:H.29, F:F.17, F:F.17, F:I.20, F:F.21, F:F.25, F:F.25, K:R.3, K:I.4, K:L.7, K:L.7 CRT.29: 23 residues within 4Å: Chain E: R.3, I.4, L.7 Chain G: A.25, I.26, H.29, F.30 Chain I: L.14, L.17, F.18, F.20, L.21, L.24, I.27, I.31 Chain J: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Ligands: BCL.24 27 PLIP interactions: 12 interactions with chain I, 9 interactions with chain J, 3 interactions with chain G, 3 interactions with chain E Hydrophobic interactions: I:L.14, I:L.14, I:L.17, I:L.17, I:F.18, I:F.18, I:F.20, I:F.20, I:L.21, I:L.24, I:L.24, I:I.27, J:E.13, J:F.17, J:F.17, J:I.20, J:F.21, J:F.21, J:F.21, J:F.25, J:F.25, G:A.25, G:I.26, G:H.29, E:R.3, E:I.4, E:L.7 CRT.34: 26 residues within 4Å: Chain E: F.22, A.25, I.26, H.29, F.30 Chain K: L.14, L.17, F.18, F.20, L.21, L.24, I.28, I.31 Chain L: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain M: R.3, I.4, L.6, L.7 Ligands: BCL.18, BCL.33 26 PLIP interactions: 11 interactions with chain K, 2 interactions with chain M, 9 interactions with chain L, 4 interactions with chain E Hydrophobic interactions: K:L.14, K:L.14, K:L.17, K:L.17, K:F.18, K:F.20, K:F.20, K:L.21, K:L.21, K:L.24, K:I.28, M:R.3, M:I.4, L:F.17, L:F.17, L:F.17, L:I.20, L:F.21, L:F.21, L:F.21, L:F.25, L:F.25, E:F.22, E:A.25, E:I.26, E:H.29 CRT.39: 26 residues within 4Å: Chain K: F.22, A.25, I.26, H.29, F.30, L.33 Chain M: L.14, L.17, F.20, L.21, L.24, I.28, I.31 Chain N: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain O: R.3, I.4, L.6, L.7 Ligands: BCL.32, BCL.37 25 PLIP interactions: 7 interactions with chain N, 4 interactions with chain K, 10 interactions with chain M, 4 interactions with chain O Hydrophobic interactions: N:E.13, N:E.16, N:F.17, N:I.20, N:F.21, N:F.25, N:F.25, K:F.22, K:A.25, K:I.26, K:H.29, M:L.14, M:L.17, M:L.17, M:F.20, M:L.21, M:L.21, M:L.24, M:L.24, M:I.28, M:I.31, O:R.3, O:I.4, O:I.4, O:L.6 CRT.49: 23 residues within 4Å: Chain A: E.28, L.31, Q.34, A.35 Chain Q: L.17, F.18, L.21, L.24, I.27, I.28, I.31 Chain R: F.17, I.20, F.21, S.24, F.25, F.28 Chain S: F.22, A.25, I.26, H.29, F.30 Ligands: BCL.50 23 PLIP interactions: 8 interactions with chain R, 9 interactions with chain Q, 4 interactions with chain A, 2 interactions with chain S Hydrophobic interactions: R:F.17, R:F.17, R:I.20, R:F.21, R:F.21, R:F.25, R:F.25, R:F.28, Q:L.17, Q:F.18, Q:L.21, Q:L.21, Q:L.24, Q:L.24, Q:I.27, Q:I.28, Q:I.31, A:L.31, A:Q.34, A:A.35, S:A.25, S:H.29 Hydrogen bonds: A:Q.34 CRT.55: 22 residues within 4Å: Chain 4: F.22, A.25, I.26, H.29, F.30 Chain Q: R.3, I.4, L.6, L.7 Chain S: L.14, L.17, L.21, L.24, I.28 Chain T: F.17, I.20, F.21, S.24, F.25, F.28 Ligands: BCL.54, BCL.87 22 PLIP interactions: 7 interactions with chain S, 4 interactions with chain Q, 8 interactions with chain T, 3 interactions with chain 4 Hydrophobic interactions: S:L.14, S:L.14, S:L.17, S:L.21, S:L.21, S:L.24, S:I.28, Q:R.3, Q:I.4, Q:L.6, Q:L.7, T:F.17, T:I.20, T:I.20, T:F.21, T:F.21, T:F.25, T:F.25, T:F.28, 4:F.22, 4:A.25, 4:H.29 CRT.56: 22 residues within 4Å: Chain M: A.25, I.26, H.29 Chain O: L.14, L.17, F.18, F.20, L.21, L.24, I.31 Chain P: E.13, F.17, I.20, F.21, S.24, F.25, F.28 Chain U: R.3, I.4, L.7 Ligands: BCL.36, BCL.42 23 PLIP interactions: 8 interactions with chain O, 10 interactions with chain P, 3 interactions with chain M, 2 interactions with chain U Hydrophobic interactions: O:L.14, O:L.17, O:F.18, O:F.20, O:L.21, O:L.21, O:L.24, O:L.24, P:E.13, P:F.17, P:F.17, P:I.20, P:I.20, P:F.21, P:F.21, P:F.25, P:F.25, P:F.28, M:A.25, M:I.26, M:H.29, U:R.3, U:I.4 CRT.62: 25 residues within 4Å: Chain O: F.22, A.25, I.26, H.29 Chain U: L.14, L.17, F.20, L.21, L.24, I.28, I.31 Chain V: E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain W: M.1, R.3, I.4, L.6, L.7 Ligands: BCL.41, BCL.59 23 PLIP interactions: 9 interactions with chain U, 2 interactions with chain W, 10 interactions with chain V, 2 interactions with chain O Hydrophobic interactions: U:L.14, U:L.17, U:F.20, U:F.20, U:L.21, U:L.21, U:L.24, U:I.28, U:I.31, W:R.3, W:I.4, V:E.13, V:F.17, V:F.17, V:I.20, V:I.20, V:F.21, V:F.21, V:F.25, V:F.25, V:F.25, O:A.25, O:H.29 CRT.68: 28 residues within 4Å: Chain U: F.22, A.25, I.26, H.29, F.30, L.33 Chain W: L.14, L.17, F.20, L.21, L.24, I.31 Chain X: L.9, E.13, E.16, F.17, I.20, F.21, S.24, F.25 Chain Y: M.1, R.3, I.4, L.6, L.7 Ligands: LMT.57, BCL.58, BCL.65 26 PLIP interactions: 9 interactions with chain X, 5 interactions with chain U, 7 interactions with chain W, 5 interactions with chain Y Hydrophobic interactions: X:F.17, X:F.17, X:I.20, X:I.20, X:F.21, X:F.21, X:F.25, X:F.25, U:F.22, U:A.25, U:I.26, U:H.29, U:L.33, W:L.14, W:L.14, W:L.17, W:F.20, W:F.20, W:L.21, W:I.31, Y:R.3, Y:I.4, Y:L.6, Y:L.7, Y:L.7 Hydrogen bonds: X:E.16 CRT.72: 24 residues within 4Å: Chain 0: M.1, R.3, I.4, L.7 Chain W: F.22, A.25, I.26, H.29, F.30 Chain Y: L.14, L.17, F.20, L.21, L.24 Chain Z: L.9, E.13, E.16, F.17, I.20, F.21, S.24, F.25 Ligands: BCL.63, BCL.70 21 PLIP interactions: 9 interactions with chain Z, 5 interactions with chain Y, 4 interactions with chain 0, 3 interactions with chain W Hydrophobic interactions: Z:E.13, Z:F.17, Z:F.17, Z:I.20, Z:I.20, Z:F.21, Z:F.21, Z:F.25, Z:F.25, Y:L.14, Y:L.17, Y:F.20, Y:L.21, Y:L.24, 0:R.3, 0:I.4, 0:L.7, 0:L.7, W:F.22, W:A.25, W:H.29 CRT.78: 23 residues within 4Å: Chain 0: L.14, L.17, F.18, F.20, L.21, L.24 Chain 1: E.16, F.17, I.20, F.21, S.24, F.25 Chain 2: M.1, R.3, I.4, L.7 Chain Y: F.22, A.25, I.26, H.29, F.30 Ligands: BCL.69, BCL.75 24 PLIP interactions: 9 interactions with chain 0, 3 interactions with chain Y, 9 interactions with chain 1, 3 interactions with chain 2 Hydrophobic interactions: 0:L.14, 0:L.17, 0:L.17, 0:F.18, 0:F.20, 0:F.20, 0:L.21, 0:L.21, 0:L.24, Y:F.22, Y:A.25, Y:I.26, 1:E.16, 1:F.17, 1:F.17, 1:I.20, 1:I.20, 1:F.21, 1:F.21, 1:F.25, 1:F.25, 2:R.3, 2:I.4, 2:L.7 CRT.85: 24 residues within 4Å: Chain 0: F.22, A.25, I.26, H.29, F.30 Chain 2: L.14, L.17, F.20, L.21, L.24 Chain 3: E.16, F.17, I.20, F.21, S.24, F.25 Chain 4: M.1, R.3, I.4, L.6, L.7 Chain 5: I.6 Ligands: BCL.74, BCL.81 22 PLIP interactions: 8 interactions with chain 2, 9 interactions with chain 3, 2 interactions with chain 0, 3 interactions with chain 4 Hydrophobic interactions: 2:L.14, 2:L.14, 2:L.17, 2:L.17, 2:F.20, 2:F.20, 2:L.21, 2:L.24, 3:E.16, 3:F.17, 3:F.17, 3:I.20, 3:I.20, 3:F.21, 3:F.21, 3:F.25, 3:F.25, 0:F.22, 0:A.25, 4:R.3, 4:I.4, 4:L.7 CRT.91: 26 residues within 4Å: Chain 2: A.25, I.26, H.29, F.30, L.33, W.40 Chain 4: L.14, L.17, F.20, L.21, L.24, I.31 Chain 5: E.16, F.17, I.20, F.21, S.24, F.25, F.28 Chain S: M.1, R.3, I.4, L.6, L.7 Ligands: BCL.80, BCL.88 21 PLIP interactions: 2 interactions with chain S, 4 interactions with chain 2, 6 interactions with chain 4, 9 interactions with chain 5 Hydrophobic interactions: S:R.3, S:I.4, 2:A.25, 2:I.26, 2:H.29, 2:W.40, 4:L.14, 4:L.17, 4:F.20, 4:L.21, 4:L.24, 4:I.31, 5:F.17, 5:F.17, 5:I.20, 5:I.20, 5:F.21, 5:F.21, 5:F.25, 5:F.25, 5:F.28

1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.64: 16 residues within 4Å: Chain B: L.155, I.282, I.285 Chain W: I.26, I.27, F.30, L.33, S.34, N.39, R.45 Chain Y: I.27 Ligands: 6PL.5, CDL.6, LMT.9, BCL.58, BCL.63 12 PLIP interactions: 8 interactions with chain W, 3 interactions with chain B, 1 interactions with chain Y Hydrophobic interactions: W:I.26, W:I.27, W:F.30, W:F.30, B:L.155, B:I.282, B:I.285, Y:I.27 Hydrogen bonds: W:L.33, W:N.39, W:R.45 Salt bridges: W:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swainsbury, D.J.K. et al., Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels. Sci Adv (2021)

Release Date

2021-01-13

Peptides

Light harvesting complex 1 Protein W: A
Reaction center protein M chain: B
Reaction center protein L chain: C
H subunit of photosynthetic reaction center complex: D
Light-harvesting complex 1 alpha chain: EGIKMOQSUWY024
Light-harvesting complex 1 beta chain: FHJLNPRTVXZ135

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
W

B
M

C
L

D
H

E
1

G
5

I
3

K
Y

M
V

O
T

Q
A

S
C

U
R

W
P

Y
N

0
J

2
G

4
E

F
2

H
6

J
4

L
Z

N
X

P
U

R
B

T
D

V
S

X
Q

Z
O

1
K

3
I

5
F

Membrane

We predict this structure to be a membrane protein.
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Light harvesting complex 1 Protein W

Reaction center protein M chain

Reaction center protein L chain

H subunit of photosynthetic reaction center complex

Light-harvesting complex 1 alpha chain

Light-harvesting complex 1 beta chain

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