SMTL ID : 6z6h.1

HDAC-DC

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.166, D.206, D.299, E.336, G.337 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.206 ZN.2: 6 residues within 4Å: Chain B: H.177, H.178, D.217, H.219, D.310, Y.350 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.177, B:D.217, B:H.219 ZN.3: 4 residues within 4Å: Chain E: H.166, H.167, D.206, H.208 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.166, E:H.167 ZN.4: 4 residues within 4Å: Chain F: H.177, D.217, H.219, D.310 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.177, F:D.217, F:H.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.H. et al., Structural basis for the regulation of nucleosome recognition and HDAC activity by histone deacetylase assemblies. Sci Adv (2021)

Release Date

2021-02-17

Peptides

Histone deacetylase HDA1: AE
Histone deacetylase HDA1: BF
HDA1 complex subunit 2: CG
HDA1 complex subunit 3,HDA1 complex subunit 3: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
F

B
B

F
G

C
C

G
I

D
D

H
J

Histone deacetylase HDA1

Histone deacetylase HDA1

HDA1 complex subunit 2

HDA1 complex subunit 3,HDA1 complex subunit 3

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