SMTL ID : 6z6o.1

HDAC-TC

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.206, H.208, D.299, G.337 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.206, A:D.206, A:H.208, A:D.299 ZN.2: 4 residues within 4Å: Chain B: D.217, H.219, D.310, Y.350 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.217, B:D.217, B:H.219, B:D.310 ZN.3: 4 residues within 4Å: Chain E: D.206, H.208, D.299, G.337 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.206, E:D.206, E:H.208, E:D.299 ZN.4: 4 residues within 4Å: Chain F: D.217, H.219, D.310, Y.350 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.217, F:D.217, F:H.219, F:D.310 ZN.5: 4 residues within 4Å: Chain I: D.206, H.208, D.299, G.337 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.206, I:D.206, I:H.208, I:D.299 ZN.6: 4 residues within 4Å: Chain J: D.217, H.219, D.310, Y.350 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.217, J:D.217, J:H.219, J:D.310 ZN.7: 4 residues within 4Å: Chain M: D.206, H.208, D.299, G.337 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:D.206, M:D.206, M:H.208, M:D.299 ZN.8: 4 residues within 4Å: Chain N: D.217, H.219, D.310, Y.350 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:D.217, N:D.217, N:H.219, N:D.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.H. et al., Structural basis for the regulation of nucleosome recognition and HDAC activity by histone deacetylase assemblies. Sci Adv (2021)

Release Date

2021-02-17

Peptides

Histone deacetylase HDA1: AEIM
Histone deacetylase HDA1: BFJN
HDA1 complex subunit 2: CGKO
HDA1 complex subunit 3,HDA1 complex subunit 3: DHLP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

I
I

M
M

B
B

F
F

J
J

N
N

C
C

G
G

K
K

O
O

D
D

H
H

L
L

P
P

Histone deacetylase HDA1

Histone deacetylase HDA1

HDA1 complex subunit 2

HDA1 complex subunit 3,HDA1 complex subunit 3

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