SMTL ID : 6z6u.1

1.25 A structure of human apoferritin obtained from Titan Mono-BCOR microscope

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

24 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.2: 5 residues within 4Å: Chain B: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.3: 5 residues within 4Å: Chain C: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.5: 5 residues within 4Å: Chain D: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.6: 5 residues within 4Å: Chain E: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.7: 5 residues within 4Å: Chain F: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.8: 5 residues within 4Å: Chain G: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.9: 5 residues within 4Å: Chain H: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.10: 5 residues within 4Å: Chain I: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.12: 5 residues within 4Å: Chain J: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.13: 5 residues within 4Å: Chain K: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.14: 5 residues within 4Å: Chain L: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.15: 5 residues within 4Å: Chain M: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.16: 5 residues within 4Å: Chain N: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.17: 5 residues within 4Å: Chain O: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.18: 5 residues within 4Å: Chain P: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.19: 5 residues within 4Å: Chain Q: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.20: 5 residues within 4Å: Chain R: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.21: 5 residues within 4Å: Chain S: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.22: 5 residues within 4Å: Chain T: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.23: 5 residues within 4Å: Chain U: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.24: 5 residues within 4Å: Chain V: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.25: 5 residues within 4Å: Chain W: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP NA.26: 5 residues within 4Å: Chain X: E.28, E.63, H.66, V.111, Q.142 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 6 residues within 4Å: Chain C: D.132, E.135 Chain K: D.132, E.135 Chain M: D.132, E.135 3 PLIP interactions: 1 interactions with chain K, 1 interactions with chain C, 1 interactions with chain M Metal complexes: K:E.135, C:E.135, M:E.135 MG.11: 6 residues within 4Å: Chain I: D.132, E.135 Chain P: D.132, E.135 Chain X: D.132, E.135 3 PLIP interactions: 1 interactions with chain P, 1 interactions with chain I, 1 interactions with chain X Metal complexes: P:E.135, I:E.135, X:E.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yip, K.M. et al., Atomic-resolution protein structure determination by cryo-EM. Nature (2020)

Release Date

2020-06-24

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
K

C
a

D
B

E
E

F
e

G
1

H
r

I
G

J
I

K
M

L
O

M
Q

N
S

O
U

P
W

Q
Y

R
2

S
4

T
F

U
H

V
P

W
X

X
6

Ferritin heavy chain

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