- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x 6ML: oxygen-damaged SF4(Covalent)
6ML.4: 17 residues within 4Å:- Chain A: G.17, C.18, T.19, G.20, C.21, E.77, G.78, G.119, T.120, C.121, G.158, C.159, P.160, P.161
- Chain B: R.62, H.174
- Ligands: SF4.3
10 PLIP interactions:10 interactions with chain A,- Hydrogen bonds: A:C.18, A:T.19, A:G.20, A:C.21, A:E.77, A:G.78
- Metal complexes: A:C.18, A:C.21, A:C.121, A:C.159
- 20 x KR: KRYPTON(Non-covalent)
KR.5: 6 residues within 4Å:- Chain A: A.34, L.37, L.38
- Chain B: F.128, Y.151, L.155
Ligand excluded by PLIPKR.6: 8 residues within 4Å:- Chain A: V.10, I.41, F.73, V.75, L.116, V.170
- Ligands: KR.7, KR.11
Ligand excluded by PLIPKR.7: 7 residues within 4Å:- Chain A: F.73, L.116, V.170, A.173, L.174
- Ligands: KR.6, KR.8
Ligand excluded by PLIPKR.8: 8 residues within 4Å:- Chain A: F.73, A.114, L.116, V.154, A.173, L.186, V.189
- Ligands: KR.7
Ligand excluded by PLIPKR.9: 7 residues within 4Å:- Chain A: T.19, S.22, V.23, L.26, T.48, V.49
- Chain B: L.109
Ligand excluded by PLIPKR.10: 7 residues within 4Å:- Chain A: L.25, V.36, I.41, I.166, V.167, V.170
- Ligands: KR.11
Ligand excluded by PLIPKR.11: 9 residues within 4Å:- Chain A: V.10, W.12, I.41, V.75, I.166, V.170
- Ligands: KR.6, KR.10, KR.12
Ligand excluded by PLIPKR.12: 8 residues within 4Å:- Chain A: W.12, V.75, L.116, V.118, I.156, I.166, V.170
- Ligands: KR.11
Ligand excluded by PLIPKR.13: 6 residues within 4Å:- Chain A: S.22, L.25, L.26, I.33, H.46, V.49
Ligand excluded by PLIPKR.14: 6 residues within 4Å:- Chain A: A.114, P.152, V.154, L.186, V.189, V.190
Ligand excluded by PLIPKR.15: 5 residues within 4Å:- Chain A: T.169, L.172, V.189, V.192, P.199
Ligand excluded by PLIPKR.16: 5 residues within 4Å:- Chain A: I.58, M.61, I.91, I.99, A.104
Ligand excluded by PLIPKR.17: 8 residues within 4Å:- Chain A: I.127, I.266, F.273, P.274, F.280
- Chain B: Q.58, I.59, R.62
Ligand excluded by PLIPKR.23: 7 residues within 4Å:- Chain B: F.111, Y.112, A.116, V.120, G.147, V.213, I.217
Ligand excluded by PLIPKR.24: 7 residues within 4Å:- Chain B: Q.117, V.120, G.122, F.128, V.148, Y.151
- Ligands: KR.27
Ligand excluded by PLIPKR.25: 6 residues within 4Å:- Chain B: V.237, S.413, L.414, L.415, V.431, W.436
Ligand excluded by PLIPKR.26: 5 residues within 4Å:- Chain A: L.26, L.37, V.49
- Chain B: Y.151, L.155
Ligand excluded by PLIPKR.27: 6 residues within 4Å:- Chain B: P.123, F.128, V.148, Y.151, I.152
- Ligands: KR.24
Ligand excluded by PLIPKR.28: 6 residues within 4Å:- Chain B: L.139, L.143, A.146, G.147, V.213, I.217
Ligand excluded by PLIPKR.29: 6 residues within 4Å:- Chain B: F.225, L.338, F.342, I.344, L.352, A.356
Ligand excluded by PLIP- 1 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zacarias, S. et al., Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem. (2020)
- Release Date
- 2020-09-09
- Peptides
- Periplasmic [NiFeSe] hydrogenase, small subunit: A
Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x 6ML: oxygen-damaged SF4(Covalent)
- 20 x KR: KRYPTON(Non-covalent)
- 1 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zacarias, S. et al., Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem. (2020)
- Release Date
- 2020-09-09
- Peptides
- Periplasmic [NiFeSe] hydrogenase, small subunit: A
Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D