- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x 6ML: oxygen-damaged SF4(Covalent)
6ML.4: 17 residues within 4Å:- Chain A: G.17, C.18, T.19, G.20, C.21, E.77, G.78, G.119, T.120, C.121, G.158, C.159, P.160, P.161
- Chain B: R.62, H.174
- Ligands: SF4.3
8 PLIP interactions:8 interactions with chain A,- Hydrogen bonds: A:C.18, A:G.20, A:C.21, A:G.78
- Metal complexes: A:C.18, A:C.21, A:C.121, A:C.159
- 11 x KR: KRYPTON(Non-covalent)(Non-functional Binders)
KR.5: 6 residues within 4Å:- Chain A: A.34, L.37, L.38
- Chain B: F.128, Y.151, L.155
No protein-ligand interaction detected (PLIP)KR.6: 6 residues within 4Å:- Chain A: F.73, L.116, V.170, A.173, L.174
- Ligands: KR.9
No protein-ligand interaction detected (PLIP)KR.7: 6 residues within 4Å:- Chain A: L.25, V.36, I.41, I.166, V.167, V.170
No protein-ligand interaction detected (PLIP)KR.8: 6 residues within 4Å:- Chain A: S.22, L.25, L.26, I.33, H.46, V.49
No protein-ligand interaction detected (PLIP)KR.9: 8 residues within 4Å:- Chain A: F.73, A.114, L.116, V.154, A.173, L.186, V.189
- Ligands: KR.6
No protein-ligand interaction detected (PLIP)KR.10: 6 residues within 4Å:- Chain A: T.19, S.22, V.23, L.26, T.48
- Chain B: L.109
No protein-ligand interaction detected (PLIP)KR.16: 7 residues within 4Å:- Chain B: F.111, Y.112, A.116, V.120, G.147, V.213, I.217
No protein-ligand interaction detected (PLIP)KR.17: 6 residues within 4Å:- Chain A: L.26, L.37, V.49
- Chain B: Y.151, L.155
- Ligands: KR.18
No protein-ligand interaction detected (PLIP)KR.18: 6 residues within 4Å:- Chain A: L.26, V.49
- Chain B: H.113, Y.151, L.155
- Ligands: KR.17
No protein-ligand interaction detected (PLIP)KR.19: 4 residues within 4Å:- Chain B: Q.117, V.120, V.148, Y.151
No protein-ligand interaction detected (PLIP)KR.20: 1 residues within 4Å:- Chain B: P.332
No protein-ligand interaction detected (PLIP)- 1 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zacarias, S. et al., Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem. (2020)
- Release Date
- 2020-09-09
- Peptides
- Periplasmic [NiFeSe] hydrogenase, small subunit: A
Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x 6ML: oxygen-damaged SF4(Covalent)
- 11 x KR: KRYPTON(Non-covalent)(Non-functional Binders)
- 1 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zacarias, S. et al., Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem. (2020)
- Release Date
- 2020-09-09
- Peptides
- Periplasmic [NiFeSe] hydrogenase, small subunit: A
Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B