SMTL ID : 6zbn.4 (5 other biounits)

HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in complex with tert-butyl 6-(5-hydroxy-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-1-yl)nicotinate (IOX4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x QEE: ~{tert}-butyl 6-[5-oxidanyl-4-(1,2,3-triazol-1-yl)pyrazol-1-yl]pyridine-3-carboxylate(Non-covalent)

QEE.1: 13 residues within 4Å: Chain A: W.78, M.119, Y.123, Y.130, H.133, D.135, R.142, L.163, H.194, V.196, R.203, W.209 Ligands: MN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.209 Hydrogen bonds: A:Y.123, A:R.203 Water bridges: A:T.207 Salt bridges: A:R.142 pi-Stacking: A:Y.123, A:Y.130

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.133, D.135, H.194 Ligands: QEE.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.133, A:D.135, A:H.194, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Figg Jr., W.D. et al., Structural Basis of Prolyl Hydroxylase Domain Inhibition by Molidustat. Chemmedchem (2021)

Release Date

2021-04-07

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Egl nine homolog 1

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