SMTL ID : 6zbo.6 (5 other biounits)

HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in Complex with 1-(6-morpholinopyrimidin-4-yl)-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-5-ol (Molidustat)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.133, D.135, H.194 Ligands: QEQ.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.133, A:D.135, A:H.194, H2O.1

1 x QEQ: 2-(6-morpholin-4-ylpyrimidin-4-yl)-4-(1,2,3-triazol-1-yl)pyrazol-3-ol(Non-covalent)

QEQ.2: 14 residues within 4Å: Chain A: I.76, W.78, M.119, Y.123, Y.130, H.133, D.135, R.142, L.163, H.194, V.196, R.203, W.209 Ligands: MN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.203 pi-Stacking: A:Y.123, A:Y.130

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: R.132, H.133, V.134, P.193 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: H.133 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: I.112, G.114, R.115, Y.210 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Figg Jr., W.D. et al., Structural Basis of Prolyl Hydroxylase Domain Inhibition by Molidustat. Chemmedchem (2021)

Release Date

2021-04-07

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Egl nine homolog 1

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