SMTL ID : 6ze3.1

FAD-dependent oxidoreductase from Chaetomium thermophilum in complex with fragment (4-methoxycarbonylphenyl)methylazanium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: T.128, T.130, R.151, S.152, G.153, N.156, D.201, A.202, R.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.203 Water bridges: A:R.217, A:R.217

1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.2: 36 residues within 4Å: Chain A: G.12, G.14, I.15, S.16, I.35, E.36, A.37, P.55, W.60, I.79, A.81, Q.82, V.83, G.86, G.87, I.90, N.91, A.92, M.93, V.94, H.230, L.231, V.232, A.268, A.269, G.270, I.277, N.521, A.522, H.523, D.555, I.556, S.566, P.567, M.568 Ligands: 8G2.7 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:P.55, A:I.79, A:I.90, A:N.91, A:A.522 Hydrogen bonds: A:I.15, A:S.16, A:A.37, A:G.38, A:A.81, A:V.83, A:G.87, A:S.88, A:N.91, A:A.92, A:V.94, A:V.94, A:V.232, A:V.232, A:A.522, A:I.556, A:S.566, A:M.568 Water bridges: A:G.14, A:A.81, A:A.81, A:N.521, A:A.569

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.73 NAG.4: 6 residues within 4Å: Chain A: A.139, G.140, N.141, E.168, W.171, N.172 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.168 Hydrogen bonds: A:N.141, A:E.168, A:E.168, A:N.172 NAG.5: 1 residues within 4Å: Chain A: N.254 No protein-ligand interaction detected (PLIP) NAG.6: 5 residues within 4Å: Chain A: F.324, N.333, T.335, Y.336, E.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.333, A:Y.336, A:E.339

1 x 8G2: (4-methoxycarbonylphenyl)methylazanium(Non-covalent)

8G2.7: 6 residues within 4Å: Chain A: A.92, V.94, L.358, Y.435, N.521 Ligands: FDA.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.92, A:L.358 Hydrogen bonds: A:Y.435, A:N.521

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.8: 6 residues within 4Å: Chain A: L.96, T.423, Y.435, L.437, G.565, S.566 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.423, A:S.566

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 2 residues within 4Å: Chain A: E.135, Q.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.135, A:E.135, A:Q.349 Water bridges: A:S.133

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Svecova, L. et al., Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-05-26

Peptides

FAD-dependent oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FAD-dependent oxidoreductase

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