SMTL ID : 7aa2.2 (1 other biounit)

Chaetomium thermophilum FAD-dependent oxidoreductase in complex with ABTS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: T.128, T.130, R.151, S.152, G.153, N.156, D.201, A.202, R.203 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.217

1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.2: 33 residues within 4Å: Chain A: G.12, G.14, I.15, S.16, I.35, E.36, A.37, W.60, A.81, Q.82, V.83, G.86, G.87, I.90, N.91, A.92, M.93, V.94, H.230, L.231, V.232, A.268, A.269, G.270, I.277, A.522, H.523, D.555, I.556, S.566, P.567, M.568 Ligands: EBS.7 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:N.91, A:A.522 Hydrogen bonds: A:I.15, A:S.16, A:S.16, A:S.16, A:A.37, A:A.81, A:V.83, A:G.86, A:G.87, A:S.88, A:N.91, A:A.92, A:V.94, A:V.94, A:V.232, A:V.232, A:A.522, A:I.556, A:S.566, A:M.568 Water bridges: A:G.14, A:G.17, A:T.80, A:A.81, A:G.271, A:A.569

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.72, N.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.73 Water bridges: A:N.73 NAG.4: 7 residues within 4Å: Chain A: A.139, G.140, N.141, F.163, E.168, W.171, N.172 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.163, A:E.168 Hydrogen bonds: A:N.141, A:E.168, A:E.168, A:N.172 Water bridges: A:E.168 NAG.5: 1 residues within 4Å: Chain A: N.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.254 NAG.6: 4 residues within 4Å: Chain A: F.324, N.333, Y.336, E.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.333, A:Y.336, A:E.339

1 x EBS: 3-ETHYL-2-[(2Z)-2-(3-ETHYL-6-SULFO-1,3-BENZOTHIAZOL-2(3H)-YLIDENE)HYDRAZINO]-6-SULFO-3H-1,3-BENZOTHIAZOL-1-IUM(Non-covalent)

EBS.7: 13 residues within 4Å: Chain A: F.53, P.55, W.56, F.59, A.92, V.94, S.357, L.358, Y.435, N.521, H.523, S.566 Ligands: FDA.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.56, A:W.56, A:F.59, A:V.94 Hydrogen bonds: A:N.521, A:S.566 Salt bridges: A:H.523 pi-Stacking: A:Y.435

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.8: 4 residues within 4Å: Chain A: A.371, P.372, K.373, S.374 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.373, A:S.374, A:S.374

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 1 residues within 4Å: Chain A: N.141 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Svecova, L. et al., Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-05-26

Peptides

FAD-dependent oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

FAD-dependent oxidoreductase

Related Entries With Identical Sequence