SMTL ID : 6zeq.1

Aspergillus oryzae Leucine Aminopeptidase A mature enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.87, Q.91 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.176, D.195, E.233, D.261 Ligands: ZN.3, CL.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.176, A:D.195, A:D.261, H2O.7, H2O.8 ZN.3: 5 residues within 4Å: Chain A: D.195, E.234, H.343 Ligands: ZN.2, CL.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.195, A:E.234, A:E.234, A:H.343, H2O.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: D.195, H.343 Ligands: ZN.2, ZN.3 Ligand excluded by PLIP

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: K.99, V.352, N.353, F.354, D.355 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.354, A:D.355, A:D.355 Water bridges: A:V.352 Salt bridges: A:K.99 SO4.6: 4 residues within 4Å: Chain A: S.308, A.334, F.335, G.336 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.308, A:S.308, A:F.335, A:G.336 Water bridges: A:K.309, A:K.309 SO4.7: 2 residues within 4Å: Chain A: R.189, P.191 4 PLIP interactions: 4 interactions with chain A Water bridges: A:S.110, A:R.189, A:R.189 Salt bridges: A:R.189 SO4.8: 1 residues within 4Å: Chain A: K.309 No protein-ligand interaction detected (PLIP) SO4.9: 2 residues within 4Å: Chain A: D.283, N.284 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.284 Water bridges: A:V.285, A:V.285, A:V.285 SO4.10: 4 residues within 4Å: Chain A: S.184, P.185, S.186, E.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.184, A:S.186, A:E.187, A:G.188 SO4.11: 4 residues within 4Å: Chain A: Q.85, H.86, E.88, T.89 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.88, A:T.89, A:T.89, A:T.89 Water bridges: A:Q.85, A:H.86 Salt bridges: A:H.86

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 3 residues within 4Å: Chain A: S.119, D.120, S.186 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.120, A:S.186 Water bridges: A:S.119, A:S.119 EDO.13: 5 residues within 4Å: Chain A: P.108, E.111, F.112, W.128 Ligands: EDO.15 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.128 Water bridges: A:E.111, A:E.111, A:E.111 EDO.14: 1 residues within 4Å: Chain A: S.376 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.376 EDO.15: 4 residues within 4Å: Chain A: P.108, W.128, K.132 Ligands: EDO.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.132, A:K.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baltulionis, G. et al., The role of propeptide-mediated autoinhibition and intermolecular chaperone in the maturation of cognate catalytic domain in leucine aminopeptidase. J.Struct.Biol. (2021)

Release Date

2021-06-16

Peptides

Leucine aminopeptidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine aminopeptidase A

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