SMTL ID : 6zgm.1

Crystal Structure of the VIM-2 Acquired Metallo-beta-Lactamase in Complex with the thiazolecarboxylate inhibitor ANT2681

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.88, H.90, H.153 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.88, A:H.90, A:H.153, H2O.2 ZN.2: 4 residues within 4Å: Chain A: D.92, C.172, H.214 Ligands: QKK.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.92, A:C.172, A:H.214, H2O.2 ZN.3: 3 residues within 4Å: Chain A: H.127 Ligands: ACT.4, ACT.5 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.127, ACT.4

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: A.106, H.127 Ligands: ZN.3, ACT.5 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.127 ACT.5: 8 residues within 4Å: Chain A: R.101, V.105, A.106, T.107, T.126, H.127 Ligands: ZN.3, ACT.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.101, A:T.126 Hydrogen bonds: A:T.107 Salt bridges: A:H.127

1 x QKK: 5-[[4-(carbamimidamidocarbamoylamino)-3,5-bis(fluoranyl)phenyl]sulfonylamino]-1,3-thiazole-4-carboxylic acid(Non-covalent)

QKK.6: 12 residues within 4Å: Chain A: F.36, W.61, D.92, H.153, C.172, R.179, G.183, N.184, V.185, A.186, H.214 Ligands: ZN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.36 Hydrogen bonds: A:R.179, A:N.184, A:V.185, A:A.186 Water bridges: A:R.179, A:G.183 Salt bridges: A:H.153, A:R.179, A:H.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.T. et al., ANT2681: SAR Studies Leading to the Identification of a Metallo-beta-lactamase Inhibitor with Potential for Clinical Use in Combination with Meropenem for the Treatment of Infections Caused by NDM-ProducingEnterobacteriaceae. Acs Infect Dis. (2020)

Release Date

2020-09-02

Peptides

Metallo-beta-lactamase VIM-2-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase VIM-2-like protein

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