SMTL ID : 6zgx.3 (3 other biounits)

Structure of human galactokinase 1 bound with 2-(4-chlorophenyl)-N-(pyrimidin-2-yl)acetamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x S6V: 1-[2-(2-oxidanylidenepyrrolidin-1-yl)ethyl]-3-phenyl-urea(Non-covalent)

S6V.1: 14 residues within 4Å: Chain A: L.47, M.62, G.203, L.220, D.222, P.223, L.225, A.226, V.227, L.302, Y.307, L.362, Q.389, A.390 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.47, A:P.223, A:L.302, A:Y.307, A:L.362 Hydrogen bonds: A:D.222, A:A.390 Water bridges: A:D.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackinnon, S.R. et al., Fragment Screening Reveals Starting Points for Rational Design of Galactokinase 1 Inhibitors to Treat Classic Galactosemia. Acs Chem.Biol. (2021)

Release Date

2020-07-29

Peptides

Galactokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Galactokinase

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