SMTL ID : 7ozx.3 (3 other biounits)

Structure of human galactokinase 1 bound with azepan-1-yl(2,6-difluorophenyl)methanone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 11 residues within 4Å: Chain A: R.44, E.50, H.51, D.53, Y.54, C.189, G.190, M.192, D.193, Y.243, G.353 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.51, A:D.53, A:G.190, A:G.190, A:D.193, A:G.353 Water bridges: A:R.44, A:D.193 Salt bridges: A:R.44

1 x HFK: 2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one(Non-covalent)

HFK.2: 14 residues within 4Å: Chain A: T.68, S.86, G.88, D.90, R.112, W.113, Y.116, V.136, S.138, L.142, G.143, S.148, S.149, L.152 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.112, A:Y.116, A:V.136, A:L.152 Hydrogen bonds: A:Y.116, A:G.143, A:S.148, A:S.148 Water bridges: A:S.148

1 x WLJ: (azepan-1-yl)(2,6-difluorophenyl)methanone(Non-covalent)

WLJ.3: 8 residues within 4Å: Chain A: V.16, L.20, A.38, V.39, S.40, V.69, K.395, L.397 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.16, A:L.20, A:A.38, A:V.69, A:L.397 Halogen bonds: A:K.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackinnon, S.R. et al., Structure of human galactokinase 1 bound with azepan-1-yl(2,6-difluorophenyl)methanone. To Be Published

Release Date

2022-05-25

Peptides

Galactokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Galactokinase

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