SMTL ID : 6zhm.1

Crystal Structure of Staphylococcus aureus RsgA bound to GDP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: K.133, D.135, K.136, G.163, N.164, R.168, Q.185, S.186, G.187, V.188, G.189, K.190, S.191, T.192 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.133, A:K.133, A:N.164, A:R.168, A:Q.185, A:G.187, A:V.188, A:G.189, A:K.190, A:S.191, A:S.191, A:T.192, A:T.192 Salt bridges: A:D.135, A:K.190

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.265, C.270, H.272, C.278, N.279 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.265, A:C.270, A:H.272, A:C.278

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 4 residues within 4Å: Chain A: K.55, F.56, V.79, R.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.55, A:K.55

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: K.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.248 EDO.5: 3 residues within 4Å: Chain A: S.122, Y.123, H.245 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bennison, D.J. et al., The Stringent Response Inhibits 70S Ribosome Formation in Staphylococcus aureus by Impeding GTPase-Ribosome Interactions. Mbio (2021)

Release Date

2021-06-30

Peptides

Small ribosomal subunit biogenesis GTPase RsgA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Small ribosomal subunit biogenesis GTPase RsgA

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