SMTL ID : 6zjo.1

Crystal Structure of Staphylococcus aureus RsgA.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.265, C.270, H.272, C.278 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.265, A:C.270, A:H.272, A:C.278 ZN.10: 4 residues within 4Å: Chain B: C.265, C.270, H.272, C.278 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.265, B:C.270, B:H.272, B:C.278

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: M.21 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: Q.78 Chain B: E.147, K.150 Ligand excluded by PLIP EDO.4: 9 residues within 4Å: Chain A: M.101, S.102, P.106, N.107, F.108, S.109, L.112, Q.185, V.188 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: D.166, D.167, R.168, T.192, H.196 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: V.79, E.81 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: N.306 Ligands: EDO.8 Ligand excluded by PLIP EDO.8: 1 residues within 4Å: Ligands: EDO.7 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: A.177, G.178, N.229, G.230 Chain B: P.138, E.140 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain B: N.146, L.149, K.150, E.153, F.161 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain B: F.108, S.109, T.110, Q.111 Ligand excluded by PLIP EDO.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: E.263 Chain B: D.166, D.167, R.168, H.196 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain B: P.89, H.221 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain B: L.112, F.238, S.239 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain B: K.274 Ligands: PO4.21 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain B: V.222, E.223, F.225, A.233, D.234 Ligand excluded by PLIP

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 7 residues within 4Å: Chain A: Q.185, S.186, G.187, V.188, G.189, K.190, S.191 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.187, A:V.188, A:G.189, A:K.190, A:S.191, A:S.191 Water bridges: A:K.190 Salt bridges: A:K.190 PO4.20: 6 residues within 4Å: Chain B: S.186, G.187, V.188, G.189, K.190, S.191 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.187, B:V.188, B:G.189, B:K.190, B:S.191 Salt bridges: B:K.190 PO4.21: 1 residues within 4Å: Ligands: EDO.18 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bennison, D.J. et al., The Stringent Response Inhibits 70S Ribosome Formation in Staphylococcus aureus by Impeding GTPase-Ribosome Interactions. Mbio (2021)

Release Date

2021-07-07

Peptides

Small ribosomal subunit biogenesis GTPase RsgA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Small ribosomal subunit biogenesis GTPase RsgA

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