SMTL ID : 6zjf.1

Crystal structure of STK17B (DRAK2) in complex with AP-229

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x QM2: 2-[6-(4-cyclopropylphenyl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid(Non-covalent)

QM2.1: 15 residues within 4Å: Chain A: K.35, L.37, V.45, A.58, K.60, I.92, E.109, Y.110, A.111, A.112, G.114, L.163, V.176, D.177 Ligands: EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.37, A:Y.110 Hydrogen bonds: A:A.111, A:D.177 Water bridges: A:D.177 Salt bridges: A:K.60

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: E.78, L.82, L.106, L.108, V.176, D.177, F.178 Ligands: QM2.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.78, A:D.177, A:F.178 Water bridges: A:K.60 EDO.3: 4 residues within 4Å: Chain A: F.29, Y.30, H.95, E.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picado, A. et al., A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation. J.Med.Chem. (2020)

Release Date

2020-07-29

Peptides

Serine/threonine-protein kinase 17B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 17B

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