SMTL ID : 6zjn.1

Respiratory complex I from Thermus thermophilus, NADH dataset, minor state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

7 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)

SF4.1: 10 residues within 4Å: Chain A: E.351, S.352, C.353, G.354, K.355, C.356, C.359, C.400, L.402, A.403 0 PLIP interactions: SF4.3: 8 residues within 4Å: Chain C: D.118, C.119, C.122, G.125, C.128, R.180, V.232, G.233 0 PLIP interactions: SF4.4: 6 residues within 4Å: Chain C: C.181, C.184, C.187, I.226, C.230, A.234 0 PLIP interactions: SF4.5: 10 residues within 4Å: Chain C: C.256, L.258, C.259, V.261, G.262, C.263, C.291, G.294, P.407, I.408 0 PLIP interactions: SF4.7: 11 residues within 4Å: Chain F: A.44, C.45, C.46, G.82, M.108, G.109, A.110, C.111, G.139, C.140, P.141 0 PLIP interactions: SF4.8: 8 residues within 4Å: Chain G: C.59, C.63, A.65, C.98, I.99, F.100, C.101, C.104 0 PLIP interactions: SF4.9: 10 residues within 4Å: Chain G: C.53, I.54, G.55, C.56, S.57, L.58, C.59, C.108, A.112, I.113 0 PLIP interactions:

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 9 residues within 4Å: Chain B: C.83, T.85, S.87, C.88, C.124, L.125, G.126, S.127, C.128 0 PLIP interactions: FES.6: 10 residues within 4Å: Chain C: F.33, C.34, S.35, I.42, G.43, C.45, R.46, C.48, A.81, C.83 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gutierrez-Fernandez, J. et al., Key role of quinone in the mechanism of respiratory complex I. Nat Commun (2020)

Release Date

2020-09-02

Peptides

NADH-quinone oxidoreductase subunit 1: A
NADH-quinone oxidoreductase subunit 2: B
NADH-quinone oxidoreductase subunit 3: C
NADH-quinone oxidoreductase subunit 4: D
NADH-quinone oxidoreductase subunit 5: E
NADH-quinone oxidoreductase subunit 6: F
NADH-quinone oxidoreductase subunit 9: G
NADH-quinone oxidoreductase subunit 15: H
NADH-quinone oxidoreductase subunit 7: I
NADH-quinone oxidoreductase subunit 10: J
NADH-quinone oxidoreductase subunit 11: K
NADH-quinone oxidoreductase subunit 12: L
NADH-quinone oxidoreductase subunit 13: M
NADH-quinone oxidoreductase subunit 14: N
NADH-quinone oxidoreductase subunit 8: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

G
9

H
7

I
A

J
J

K
K

L
L

M
M

N
N

O
H

Membrane

We predict this structure to be a membrane protein.
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NADH-quinone oxidoreductase subunit 1

NADH-quinone oxidoreductase subunit 2

NADH-quinone oxidoreductase subunit 3

NADH-quinone oxidoreductase subunit 4

NADH-quinone oxidoreductase subunit 5

NADH-quinone oxidoreductase subunit 6

NADH-quinone oxidoreductase subunit 9

NADH-quinone oxidoreductase subunit 15

NADH-quinone oxidoreductase subunit 7

NADH-quinone oxidoreductase subunit 10

NADH-quinone oxidoreductase subunit 11

NADH-quinone oxidoreductase subunit 12

NADH-quinone oxidoreductase subunit 13

NADH-quinone oxidoreductase subunit 14

NADH-quinone oxidoreductase subunit 8

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